FMO11496.5prime Sequence
1074 bp (964 high quality bases) assembled on 2011-12-09
> FMO11496.5prime
CAGTCGACATGCGGATAAATCACCAATGGATATACTATGCGATCTTGTCT
CTCTGCTGGTTTAATAAAGCTACTCTGGGCGCCATTCTGGACTCACGTTG
TTACCTGGAGGGCGGAGGTTCCGCGGAAAGTTTTCTTGCCACCGAGGATT
TGGCGGTGGGCTCCATAATCGGCAAGCTGCGGATCAATGGGGATGCCAAT
GCCGAAACAGGCGACATCAATCTTTCATTGAGGGAAAAGAATGCACCAGT
TGAGATTCATCCCGGCACCAAGGAGCTAGCCCTATCGGTGGAACTGGACA
AGGAGGGTGTGAGAGGACCATCGTCCATTTACGTGAATGTGATCTGCATA
CGACGGCATTCAACGGATCCGAGCTTCGTCATTCCCGTTAACGTGCGAGT
AACTGATGTGAATGACAATGCCCCCCAGTGGATCGGAACGCCCTACACTC
TAACTCTTTCGGAGGTGACCGTTCCGGGCACTAGAATCCTGCAGGGCGCC
CGTGCCGAGGATGCCGACCAACCGGGTCCCTTCTCTACGGTGGAGTACCA
GGTGCTGCCAGGACCGTACTCGGAGTACGTGCAGTTTCTCAATCCTCTGG
AAGGCACGCTGGTGCTAAAGAAAGCCCTCGACTACGAACAGCTTCAGAAT
TTCACGGTGAAGCTGAGGGCGCAGGATCAGGGAACACCGCCACGTCACTC
GGACACGTTGCTGCGGGTGGTCATCACGGATGCGGATGATCAGAACCCAA
GTTCCAGCGAGAGTCCTACAGCGCTGAGATACCAGCGGATGGTAGGCCAG
GAGAGCTGCGCATGCGGCCGGAGCCCCTGAAAGCGGTGGATCAGGACGAG
GGTATTTGTGCGCCCATTCAGTACACGATAGTCCAGTCGCAGGATGCCAA
GTACTTCCGCATCCATCCGCAAATGGAGCTATTAGTCTGCTGACACCATC
GGATATGCTGATGTGCCGATGGAGCAACGTTGGTGGTGAAGGCACGCAGA
TCGACATCAAGATCGATTATGCCTTGACTGACGTCGGTTGACGCGAACTG
CAGTCAACATGGATTGATCACTCT
FMO11496.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cad96Cb-RD | 3003 | CG13664-RD | 407..1431 | 9..1028 | 4865 | 98.7 | Plus |
| Cad96Cb-RB | 3016 | CG13664-RB | 429..1453 | 9..1028 | 4865 | 98.7 | Plus |
| Cad96Cb-RC | 2991 | CG13664-RC | 407..1431 | 9..1028 | 4865 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25225984..25226624 | 1006..371 | 2880 | 98.4 | Minus |
| 3R | 32079331 | 3R | 25227845..25228148 | 371..68 | 1520 | 100 | Minus |
| 3R | 32079331 | 3R | 25230633..25230693 | 69..9 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:15:40 has no hits.
FMO11496.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:55 Download gff for
FMO11496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Cb-RB | 407..1450 | 9..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:02 Download gff for
FMO11496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Cb-RC | 407..1450 | 9..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:41 Download gff for
FMO11496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Cb-RC | 407..1450 | 9..1046 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:41 Download gff for
FMO11496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25225943..25226623 | 372..1046 | 97 | <- | Minus |
| 3R | 25227845..25228146 | 70..371 | 100 | <- | Minus |
| 3R | 25230633..25230693 | 9..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:02 Download gff for
FMO11496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21051665..21052345 | 372..1046 | 97 | <- | Minus |
| arm_3R | 21053567..21053868 | 70..371 | 100 | <- | Minus |
| arm_3R | 21056355..21056415 | 9..69 | 100 | | Minus |
