FMO11507.5prime Sequence
566 bp (566 high quality bases) assembled on 2012-05-14
> FMO11507.5prime
CAGTCGACATGGAGTATGTGCACTCTGTTTGGAGCTACCTAGCCTCGATC
TGCAACTGCTGGCAATGCACCGAAGATCCAGGTGCGCAGCCCAACGAGCC
GAACGAGCGGACACACCTTCTCGTGGACCCGGTGAACCATAGTCCTGCCC
TTCGACGGAGCAACTCCGATGGCCTCAGCACCGACTACGCCCACTCCCTT
CCCAAGAAGGACGATCAGAACGCCCTCTCCAGACTGGTGCAGAATACTGC
GATAAACATGATAAACGTTGGAGCCATGGACTGTCACAGCCTGGAGCACC
AGGAGTACGCCGATAGAATAAGATTGTACTCGCAGCGGTTGCATCAACAG
TGGAACAACGGCCAGCACGCCAGTATCGCACCAAAAGGTCTCCTTAAAGA
TGTACCAAGCCATCAGTTCTATCTGTCTAAGCCAACCTATCCAGATGACA
CTGCTCAAATGAAGCTCTTCACCGAGAAGGCACACATCAGTGTCTCGCAC
ATACAGATCGACCACAAAGAGGCCGTGGTTGTTCCCTTCCGGATTCCCGC
AAGCTTTCTAGACCAT
FMO11507.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14184-RB | 656 | CG14184-RB | 69..608 | 9..548 | 2700 | 100 | Plus |
| CG14184-RA | 759 | CG14184-RA | 69..608 | 9..548 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20028646..20028813 | 253..86 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 20028243..20028378 | 389..254 | 680 | 100 | Minus |
| 3L | 28110227 | 3L | 20027970..20028059 | 548..459 | 450 | 100 | Minus |
| 3L | 28110227 | 3L | 20028872..20028952 | 89..9 | 405 | 100 | Minus |
| 3L | 28110227 | 3L | 20028111..20028191 | 462..382 | 375 | 97.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:40:49 has no hits.
FMO11507.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:58:57 Download gff for
FMO11507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14184-RB | 79..626 | 1..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:06 Download gff for
FMO11507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14184-RA | 61..608 | 1..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:01 Download gff for
FMO11507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14184-RA | 61..608 | 1..548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:01 Download gff for
FMO11507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20027970..20028059 | 459..548 | 100 | <- | Minus |
| 3L | 20028115..20028185 | 388..458 | 100 | <- | Minus |
| 3L | 20028245..20028378 | 254..387 | 100 | <- | Minus |
| 3L | 20028646..20028809 | 90..253 | 100 | <- | Minus |
| 3L | 20028872..20028960 | 1..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:06 Download gff for
FMO11507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20021070..20021159 | 459..548 | 100 | <- | Minus |
| arm_3L | 20021215..20021285 | 388..458 | 100 | <- | Minus |
| arm_3L | 20021345..20021478 | 254..387 | 100 | <- | Minus |
| arm_3L | 20021746..20021909 | 90..253 | 100 | <- | Minus |
| arm_3L | 20021972..20022060 | 1..89 | 95 | | Minus |
