FMO11508.5prime Sequence
875 bp (-72 high quality bases) assembled on 2012-05-14
> FMO11508.5prime
CAGTCGACATGAGCACTCTTGATGCCAAAAAGATAGAAGAGGCGGAGGCC
TTGATAGGACAGACGGATAGTGCCGCGAATGAGTATGCCAAAGCTGGTAT
GTATTTCAAGGCAGCAACCGCATATCGAATTGCCAAAAGTTTCGATAAGC
GCAAGGATTGTCTTTTGAAGGCCATCGACTGTTACGAAAACAACAAGTCA
TGGTTCCATGCAGCCAAATCCTACGAGCAGATTATCCTGCTTGCCAAAGA
AACGGACAAACTGTCCGAAGTGGAGGACTATGCCAATAGGGCTTGCTGTC
TCTACCAGCAACATGGTTCGCCGGAAGCAGCAGCTGCTGCTCTCGATAAA
GCCGCCAAAATGACGGAATCCAAGCATCCTGACTTGGCTTTGGGATTTTA
CAAACGCGCCCTGGCAGTCGTCTTGATTGGGGACTCCACTCATCAGGCAT
CGGAATTTGCATCGAAGGTTTCCCGGATATTGGTCAGACTCAAAAAATAT
GAAGAAGCCACGAAAGCCCTCAAAAAGGAAATAAGCCTAAATCTGCAGAC
AAAGTCTTACGGACAAGTTGGCCGTTTAGTAGTTGCTTTAATACTGGTAC
AATTAACACTAGAGGATTACGTGGATTGCCAAGAAGACCTTCAAGAAATG
GGGAAACCGTTGTGATCCCCAGGGAGGTGAACACATTACAAAACCTACTC
AAAGCTTTTGACGACGAGGATCCTGAGCTGGCCACCAAGATGCTGGCATC
TCCATTCATAAGACACATGGACGTGGAGTACGCACTTTTATCTAAAGATG
TGCCATTACCAAAAGGAAATCGTCAAATGACCCAAAATGCAGTCGACAAT
GCGCAAACGCAGCTTTCTAGACCAT
FMO11508.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaSnap2-RA | 1002 | CG6208-RA | 27..875 | 9..858 | 4165 | 99.5 | Plus |
| gammaSnap1-RA | 1117 | CG3988-RA | 190..883 | 101..796 | 685 | 73.8 | Plus |
| sei-RC | 3197 | CG3182-RC | 154..375 | 727..504 | 215 | 73.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10120533..10121374 | 852..9 | 4105 | 99.6 | Minus |
| 2R | 25286936 | 2R | 24047562..24047852 | 796..504 | 300 | 75.1 | Minus |
| 2R | 25286936 | 2R | 24048335..24048454 | 230..111 | 255 | 80.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:40:53 has no hits.
FMO11508.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:58:58 Download gff for
FMO11508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6208-RA | 20..875 | 1..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:09 Download gff for
FMO11508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6208-RA | 20..875 | 1..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:03 Download gff for
FMO11508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaSnap2-RA | 20..875 | 1..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:03 Download gff for
FMO11508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10120526..10121380 | 1..858 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:09 Download gff for
FMO11508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5946248..5947102 | 1..858 | 99 | | Minus |
