Clone FMO11517 Report

Search the DGRC for FMO11517

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:115
Well:17
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42634-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11517.5prime Sequence

368 bp (368 high quality bases) assembled on 2012-05-14

> FMO11517.5prime
CAGTCGACATGTCCTCGTCTGTGGATCACGTGGTACACCACGTACTGGCC
CCAATGGCAATCAACGTCCTCGATCGCGTGGTGCCAGTAATCCGCCAATT
GGTGATCATCATGCATCAGGCATTTCTGGTTGATCACCATGTGTCGGAGC
CCGTGATCGATGTATCCGGCATGATTCAGCCCGTTCGTAAAATAGTCTTG
ATTGTAAACGATTCAACGCCGGAGCACCATGTCGACCAGGAGCAGGTGGT
CAGTTCGGATGACATTAACTACCTGATAAATGAAATTTCGCGAAGTATCC
GAAACTTGGCCCGTTCGACCTATAATACCATCTCGGCGATGGCTGGAGAG
GCAAGCTTTCTAGACCAT

FMO11517.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG42635-RA 1028 CG42635-RA 59..401 8..350 1715 100 Plus
CG42634-RA 1028 CG42634-RA 59..401 8..350 1715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18007993..18008335 8..350 1715 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:41:23 has no hits.

FMO11517.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:03 Download gff for FMO11517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42635-RA 53..405 1..356 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:23 Download gff for FMO11517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42635-RA 53..405 1..356 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:15 Download gff for FMO11517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42634-RA 53..405 1..356 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:15 Download gff for FMO11517.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18007987..18008340 1..352 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:23 Download gff for FMO11517.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18007987..18008340 1..352 98 <- Plus