Clone FMO11520 Report

Search the DGRC for FMO11520

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:115
Well:20
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9259-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11520.5prime Sequence

964 bp (911 high quality bases) assembled on 2012-05-14

> FMO11520.5prime
CAGTCGACATGGCGACTGCTTTGGAACTGAGTCCAACCGAGATTCGCGGC
CTGTGCCAGCGGTACTTTCATCAAGATGTTTCCAATTCGGATACGGGGTT
CGATATAGTCAACTATACTCTTAAGCCCACCTCGGATGCTCCAGCCGGAT
ACTTGGGCAGCCACCTCTACCTGCACGTCACTCTGAAGCTTCACAATTCC
GAGGAGGTCCGGCAGCTCACATTCTTCTCGAAGTCGGCGCCCGTGGGTAA
TGAGTCGCGAATGGAATACCTAAAGGATTTTGGAGTGTTCGAAAAGGAAA
TCGCTGTCTACCAGAACGTTCTACCCGATCTTCACAAGGCCTGTGCAGAA
GTGGCGCCCAAGTGCTATTACGCGGACAAGAATCTACTGATCTTTGAAAA
CCTCGCAGATCAGGGCTATCGAATGGGTGCTGGACGGGATGGTCTGCTGA
CCTATGAGCAGCTCCATTGCTGTCTAAAAACCTTGGCCGCCATGCATGCT
GGTTCCATAATCCAGGAACAGAGAACGGGACAAAAAATAGCACAGTCTCA
GCCTAAATCAGTGGTGGAGAATGCCTATCCCAGTGATGTGTCGCCGGAAC
ATATGAGGATGGTGAATTTTCAAAATGCCTGTCTGGTGCTCAAGGAGTTC
ATCAAACTAATACCCAAATATCAGTCCAAGTTGGATTACGTATTGGAAAA
CTTTACAGAAAAGATGTCCTTTATTTTTGAGGCCGTCAAGACCTCGGATG
TGTACCAGATACCATACTCCATGGCGATTTGTGGGCCAATAATATCATGT
TCCAGTATGGCAGATATGGCGAGGTTTCCACTGCAGTGCCGCCTTGTGGA
CTTCCAGTTGGACAGATATGCCCCACCTGTTCTTCGATGTCCTGACCGTC
TCACCATTCCCACTTCAAAGAAGTTCAAGGTACGCCCATCTCATTGAACT
TCTGGCGGAATACT

FMO11520.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9259-RC 1466 CG9259-RC 129..1088 4..964 4555 98.5 Plus
CG9259-RB 1353 CG9259-RB 16..975 4..964 4555 98.5 Plus
CG9259-RA 1453 CG9259-RA 16..975 4..964 4555 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21089562..21090521 4..964 4430 98.5 Plus
Blast to na_te.dros performed on 2014-11-28 02:41:36 has no hits.

FMO11520.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:05 Download gff for FMO11520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9259-RA 1..957 7..964 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:28 Download gff for FMO11520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9259-RA 14..975 1..964 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:19 Download gff for FMO11520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9259-RA 14..975 1..964 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:19 Download gff for FMO11520.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21089560..21090521 1..964 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:28 Download gff for FMO11520.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21089560..21090521 1..964 98   Plus