Clone FMO11525 Report

Search the DGRC for FMO11525

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:115
Well:25
Vector:pMK33-CFH-BD
Associated Gene/TranscriptVha16-3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11525.5prime Sequence

500 bp (500 high quality bases) assembled on 2012-05-14

> FMO11525.5prime
CAGTCGACATGGCAACAGATGCAGCTGACAAGGATAAGCCGGCGTACTCG
TTCTTCTTTGGTTCGATGGGAGCGGCATCGGCCATCATCTTTTCAGCCTT
GGGAGCGGCATATGGAACGGCCAAGTCGGGCACTGGGATTGCAGCCATGG
CCGTAATGCGACCCGAATTGATCATGAAATCGATTATTCCCGTTGTGATG
GCTGGTATCATTGCGATCTATGGCCTGGTGGTCTCCGTTCTGATTGCCGG
ATCTCTGTCGGATTCGTATACCATTCGCAAGGGATACATCCACCTGGCAG
CCGGATTATCGGTGGGTTTCGCCGGATTGGCGGCTGGATTTGCCATTGGG
ATTGTGGGTGATGCCGGAGTGCGGGGCACTGCCCAGCAGCCACGCCTTTT
TGTGGGCATGATCCTGATCCTGATCTTCGCCGAGGTACTGGGTCTGTATG
GGCTGATCGTCGCCATTTACCTGTACACCAAGGCAAGCTTTCTAGACCAT

FMO11525.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-3-RB 633 CG32090-RB 69..542 9..482 2370 100 Plus
Vha16-3-RA 587 CG32090-RA 23..496 9..482 2370 100 Plus
Vha16-1-RB 2798 CG3161-RB 145..563 66..478 555 76.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11473408..11473881 9..482 2370 100 Plus
3L 28110227 3L 11475145..11475468 159..482 375 74.4 Plus
2R 25286936 2R 6627477..6627668 478..287 345 78.6 Minus
2R 25286936 2R 6627768..6627925 250..93 295 79.1 Minus
2L 23513712 2L 10736392..10736579 478..291 280 76.6 Minus
2R 25286936 2R 16947727..16947868 469..328 215 76.8 Minus
Blast to na_te.dros performed on 2014-11-28 02:41:55 has no hits.

FMO11525.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:08 Download gff for FMO11525.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-3-RA 15..502 1..489 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:38 Download gff for FMO11525.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-3-RA 15..502 1..489 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:26 Download gff for FMO11525.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-3-RA 15..502 1..489 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:26 Download gff for FMO11525.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11473400..11473887 1..489 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:38 Download gff for FMO11525.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11466500..11466987 1..489 98   Plus