Clone FMO11526 Report

Search the DGRC for FMO11526

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:115
Well:26
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG43071-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11526.5prime Sequence

209 bp (-71 high quality bases) assembled on 2012-05-14

> FMO11526.5prime
CACTCGACATGTTGTTACAATCGATATTTCTGAAAATATTGGCCGTTTTT
TTGGTCTGCTGGCTGGGACACGTCACAGCCCAGTCATCTGCCCATTATAT
AGAGCTTGAAATTGGTTCAAGGGGTGAAGGTCCACCGGAAAAGACGGAAT
TTCCCTGGGGCAATGATGACCAGGATCTTGAAGCAACATTTGCAAGCTTT
CTAGACCAT

FMO11526.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG43071-RC 514 CG43071-RC 26..208 9..191 870 98.4 Plus
CG43071-RB 316 CG43071-RB 26..208 9..191 870 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18864927..18865056 191..62 635 99.2 Minus
2R 25286936 2R 18865140..18865193 62..9 240 96.3 Minus
Blast to na_te.dros performed on 2014-11-28 02:41:59 has no hits.

FMO11526.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:09 Download gff for FMO11526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43071-RA 2..165 31..195 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:40 Download gff for FMO11526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43071-RB 23..217 6..202 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:28 Download gff for FMO11526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43071-RB 23..217 6..202 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:28 Download gff for FMO11526.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18864924..18865055 63..192 96 <- Minus
2R 18865140..18865196 6..62 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:40 Download gff for FMO11526.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14752429..14752560 63..192 96 <- Minus
arm_2R 14752645..14752701 6..62 94   Minus