FMO11531.5prime Sequence
1149 bp (999 high quality bases) assembled on 2012-05-14
> FMO11531.5prime
CAGTCGACATGTCCGACGACGACTGCGATATATTCAGTGCTGCTCGCAAG
CGGATTCCCGAAATAGCTTTGCCCAAGAATCCTTACAATCTTGGCAATGA
TTCCTTCTCCAAGGAGGTGGACTACGATTTCATTGAAGACCTCCCCAAGA
AATCAACTAAAACTGGCAAACGAAAGAACCCTGCAGCGACGCGGAAAAAT
CCACCCAAAAGTCAGGATGATGCTTCGCCACCAAAACAGGCAGAACATAA
GGCTGTGGAGCCAGAAGAGGATATGAGAACAGAGCGCTCCCTATCACCGG
TATCCCTGTTGATATTGGAGATGGAAAAGAAAAATGGCCAGCAATCGGAT
GTGGAGAAGCACGCCAAAGAAAATGACGTTGGTCCTGTGGCCAGACGCAC
ACGGTCATCGTTAAATAGGTCAGAAATGGCGCCACCACCTGTTTCACCGA
CTGTGGAGGTGCCCACACAGACGAAACCAAAGAAGCGCGGCCAAAAAAAG
AGAACATCTCTAACAACCACAACCAGCAACTCTGCTTCGATGGAGGTCTC
ATTGCCAAGCATTGTAGGTCAGAACAATGAGCACATTAGCAGACGGTGGA
CGTTGGCCGAAGTTGCAGCCCGTTCCAAAGTGGTGGACAGTATTGATCTG
GTATCTGCGGTCGCTCCCCGAGTGGAGGGATTTGTTAATCTAGACTCTGA
AGACGAGGGTGAAAAGGAGGCTCCTCCTGTCGTAGAGGAAGAAAATATTT
TTGATAACGATAATCCCACAATAGAAGTAGCTTTGTCGTGGCTTGCGAGA
TCCAGATTTATAAATTGCGGCAGCACAAAAGTTTAAGCATCTGTTCAAGG
AGTTAGCATCACGCAATGGGATAGATGAGAATGATATACCGGTGGATATG
TACTATACTTCGTTGGACCTGAGGATAACGCCGCCACAGCATTGGTCCTC
AATCATTTCATACCCTCACTGGCCATCCAACAAAAAAGTCACCAATATTA
CCACGTGCTGCCTAAAATTGCACTCCCAATCCAGATGCTCCCTTTGCCGA
AACCTAAGAAGGTTCCCAGGTTAAAGTGACCAGGCGGATAAATTGTAGCA
CTCCGTTGGTGTGTATACCCATGTAAAGAAACTCTGATATATTCCAAAT
FMO11531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4449-RD | 1500 | CG4449-RD | 77..1201 | 9..1148 | 4850 | 96.3 | Plus |
| CG4449-RA | 1677 | CG4449-RA | 254..1378 | 9..1148 | 4850 | 96.3 | Plus |
| CG4449-RE | 1497 | CG4449-RE | 77..1198 | 9..1148 | 4795 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23250600..23251104 | 569..65 | 2525 | 100 | Minus |
| 3R | 32079331 | 3R | 23250023..23250196 | 968..795 | 605 | 94.9 | Minus |
| 3R | 32079331 | 3R | 23250425..23250540 | 685..570 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 23250256..23250363 | 791..684 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 23251167..23251224 | 66..9 | 290 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 1417..1463 | 736..783 | 111 | 72.9 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 1309..1355 | 736..783 | 111 | 72.9 | Plus |
FMO11531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:13 Download gff for
FMO11531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RA | 250..1230 | 1..984 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:51 Download gff for
FMO11531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RA | 250..1230 | 1..984 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:37 Download gff for
FMO11531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RA | 250..1230 | 1..984 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:37 Download gff for
FMO11531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23249948..23249963 | 969..984 | 100 | <- | Minus |
| 3R | 23250023..23250201 | 791..968 | 95 | <- | Minus |
| 3R | 23250257..23250363 | 684..790 | 100 | <- | Minus |
| 3R | 23250427..23250540 | 570..683 | 100 | <- | Minus |
| 3R | 23250600..23251102 | 67..569 | 100 | <- | Minus |
| 3R | 23251167..23251228 | 1..66 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:51 Download gff for
FMO11531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19075670..19075685 | 969..984 | 100 | <- | Minus |
| arm_3R | 19075745..19075923 | 791..968 | 95 | <- | Minus |
| arm_3R | 19075979..19076085 | 684..790 | 100 | <- | Minus |
| arm_3R | 19076149..19076262 | 570..683 | 100 | <- | Minus |
| arm_3R | 19076322..19076824 | 67..569 | 100 | <- | Minus |
| arm_3R | 19076889..19076950 | 1..66 | 93 | | Minus |
