FMO11537.5prime Sequence
1073 bp (1017 high quality bases) assembled on 2012-05-14
> FMO11537.5prime
CAGTCGACATGAGCCACATACCCATTAGTAACACAATTCCAACAAAACAA
ACTGATGGTAATGGTAAAGCTAACATTTCGCCGGATAAGCTGGATCCCAA
GGTTTCGATCGACATGGAGGCGCCGGAGTTCAAGGATTTTGCCAAGACAA
TGGTCGACTTTATAGCCGAATATCTGGAGAATATACGCGAAAGGCGCGTT
CTGCCGGAAGTGAAGCCTGGCTACCTGAAGCCATTGATTCCGGATGCTGC
GCCCGAGAAGCCGGAGAAGTGGCAGGATGTGATGCAGGACATCGAGCGAG
TCATCATGCCGGGCGTGACACACTGGCACAGTCCCAAGTTTCATGCCTAC
TTCCCCACGGCCAACTCGTATCCAGCGATCGTTGCGGACATGCTGAGTGG
AGCGATTGCCTGCATCGGATTCACGTGGATCGCCAGTCCCGCGTGCACGG
AACTCGAGGTGGTCATGATGGATTGGCTGGGCAAGATGCTGGAGCTGCCG
GCAGAGTTCCTGGCCTGTTCGGGCGGCAAGGGTGGCGGTGTCATCCAGGG
CACGGCCAGTGAGTCCACACTGGTGGCTCTGCTGGGAGCCAAGGCCAAGA
AGTTGAAGGAGGTGAAGGAGCTCCATCCGGAGTGGGATGAGCACACCATC
TTGGGCAAGTTGGTGGGCTACTGCTCGGACCAGGCTCACTCATCCGTGGA
GCGGGCTGGTCTTCTGGGCGGAGTAAAGCTCCGTTCCGTGCAGTCCGAGA
ATCACAGAATGCGTGGTGCTGCCCTGAAAAGGCCATCGAACAGGATGTGG
CCGAGGGTTTGATTCCCTTCTACGCGGTGGTCACCCTGGGCACCACCAAC
TCCTGCGCCTTCGACTACTTGGATGAGTGTGGACCGGTGGGAAACAAGCA
CAATTTGTGGATCCTTGTGGACGCTGCCTATGCCGGATCCGCTTTCATTT
GCCCCGAGTATCGCCACCTGATGATGGGCATCGAATCAGCAAACTCTTTC
CATTTCAATCACCCATGGATGCTGGGTGAACTTTGACTGCTCGCCAATGT
GGGCTGAAGGAATCCCAGTTGTT
FMO11537.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddc-RC | 2085 | CG10697-RC | 255..1318 | 9..1071 | 5065 | 98.7 | Plus |
| Ddc-RB | 1929 | CG10697-RB | 196..1162 | 106..1071 | 4580 | 98.6 | Plus |
| Ddc-RD | 2797 | CG10697-RD | 1065..2030 | 107..1071 | 4575 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19117267..19118130 | 1052..192 | 4025 | 98.5 | Minus |
| 2L | 23513712 | 2L | 19119319..19119417 | 107..9 | 495 | 100 | Minus |
| 2L | 23513712 | 2L | 19119155..19119242 | 194..107 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:42:43 has no hits.
FMO11537.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:17 Download gff for
FMO11537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RC | 242..1312 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:04 Download gff for
FMO11537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RC | 248..1318 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:48 Download gff for
FMO11537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RC | 248..1318 | 1..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:48 Download gff for
FMO11537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19117247..19118128 | 194..1073 | 98 | <- | Minus |
| 2L | 19119156..19119241 | 108..193 | 100 | <- | Minus |
| 2L | 19119319..19119422 | 1..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:04 Download gff for
FMO11537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19117247..19118128 | 194..1073 | 98 | <- | Minus |
| arm_2L | 19119156..19119241 | 108..193 | 100 | <- | Minus |
| arm_2L | 19119319..19119422 | 1..107 | 96 | | Minus |
