Clone FMO11538 Report

Search the DGRC for FMO11538

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:115
Well:38
Vector:pMK33-CFH-BD
Associated Gene/Transcriptverm-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11538.5prime Sequence

1134 bp (1005 high quality bases) assembled on 2012-05-14

> FMO11538.5prime
CAGTCGACATGGCGCGTTGGTGGCCAATTTTGAGCGTTGTGTGCCTCTGC
CTTGCTGTTGCACATGGCCAGGACAAGCTGGAGGGCGTTGATGTGGAGGA
GGTGTGCGCCGATCGTCCCGCGGATGAGTACTTCCGCCTGGAGACCGACG
GCGACTGCCGCGAGGTGTACAGGTGCGACAGTGCCGGCGAAGATGGCACT
TGGCGTTTGGCGCCGATTCGCTGCGCCGGCGGCCTGGCATTCGATGTTTT
GCGCCAACTTTGCGATTGGAAGTCGAATGTGAAGTCCTGCGATGTGCTCG
AGAAGCCGCGCAAGGCCAAGCCCATCCTGAAGACGGATGAGCCCATCTGT
CCCGAGGGTAAGCTGTCCTGCGGCGACGGCGAGTGCCTGGACAAGGAGCT
CTTCTGCAACGGCAAGTCCGACTGCAAGGACGAATCCGATGAGAACGCCT
GCTCTGTCGATGAGGATCCCAACCGCGCCCCCGAATGCGATCCGACGCAG
TGCGCCCTGCCCGACTGCTTCTGCTCGGCGGACGGAACCCGCATTCCCGG
CGGCATTGAGCCCCAACAGGTGCCCCAGATGATCACGATCACCTTCAACG
GCGCCGTCAACGTGGACAACATCGACCTGTACGAGGACATCTTCAACGGA
CAGCGCCAGAATCCCAACGGCTGCTCCATCAAGGGCACCTTCTTCGTGTC
CCACAAGTACACCAACTACTCGGCGGTGCAGGACCTTCATCGTCGCGGAC
ACGAGATCTCCGTGTTCTCGCTAACGCACAAGGATGACCCCAACTACTGG
ACCGGCGGCAGCTACGACGACTGGCTGGCCCGAGATGGCCGGCTCCCGAC
TGATCGTGGAGCGCTTCGCCCACATCACCGACGGCTCCATCATCGGCATG
CGGGCGCCCTACCTCCGCGTGGGCGGCAACAAGCAGTTCGAGATGATGGC
CGATCAGTCTTCGTGTACGACGCCTCCATCACGGCTCCTTGGCCGCGTGG
CCATTTGGCATCACCCCTGTACTTCCGCATGCCGCACAGTGCACGGCAAC
TCGCAACAATGCCATACTAGGGACCCATCCCGGTGTGGGAGATGGGCTCT
GAACAGACTGGACGGGTCGACACAATCCTACTTC

FMO11538.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
verm-RH 2183 CG8756-RH 114..1204 8..1095 5005 98 Plus
verm-RI 2255 CG8756-RI 239..1276 61..1095 4740 97.9 Plus
verm-RG 2165 CG8756-RG 388..1186 300..1095 3545 97.3 Plus
verm-RI 2255 CG8756-RI 114..166 8..60 265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19691069..19691656 1038..454 2625 98 Minus
3L 28110227 3L 19691809..19691958 453..304 750 100 Minus
3L 28110227 3L 19692721..19692853 303..171 665 100 Minus
3L 28110227 3L 19692981..19693095 174..60 575 100 Minus
3L 28110227 3L 19702222..19702487 733..465 500 79.9 Minus
3L 28110227 3L 19694973..19695025 60..8 265 100 Minus
3L 28110227 3L 19701967..19702061 988..895 185 82.1 Minus
Blast to na_te.dros performed on 2014-11-28 02:42:47 has no hits.

FMO11538.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:17 Download gff for FMO11538.5prime
Subject Subject Range Query Range Percent Splice Strand
verm-RC 102..1217 1..1113 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:05 Download gff for FMO11538.5prime
Subject Subject Range Query Range Percent Splice Strand
verm-RF 105..410 1..305 98 -> Plus
verm-RF 524..1333 306..1113 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:49 Download gff for FMO11538.5prime
Subject Subject Range Query Range Percent Splice Strand
verm-RH 106..1221 1..1113 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:49 Download gff for FMO11538.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19690995..19691656 454..1113 95 <- Minus
3L 19691809..19691958 304..453 100 <- Minus
3L 19692721..19692851 173..303 100 <- Minus
3L 19692983..19693094 61..172 100 <- Minus
3L 19694973..19695031 1..60 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:05 Download gff for FMO11538.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19684095..19684756 454..1113 95 <- Minus
arm_3L 19684909..19685058 304..453 100 <- Minus
arm_3L 19685821..19685951 173..303 100 <- Minus
arm_3L 19686083..19686194 61..172 100 <- Minus
arm_3L 19688073..19688131 1..60 93   Minus