FMO11538.5prime Sequence
1134 bp (1005 high quality bases) assembled on 2012-05-14
> FMO11538.5prime
CAGTCGACATGGCGCGTTGGTGGCCAATTTTGAGCGTTGTGTGCCTCTGC
CTTGCTGTTGCACATGGCCAGGACAAGCTGGAGGGCGTTGATGTGGAGGA
GGTGTGCGCCGATCGTCCCGCGGATGAGTACTTCCGCCTGGAGACCGACG
GCGACTGCCGCGAGGTGTACAGGTGCGACAGTGCCGGCGAAGATGGCACT
TGGCGTTTGGCGCCGATTCGCTGCGCCGGCGGCCTGGCATTCGATGTTTT
GCGCCAACTTTGCGATTGGAAGTCGAATGTGAAGTCCTGCGATGTGCTCG
AGAAGCCGCGCAAGGCCAAGCCCATCCTGAAGACGGATGAGCCCATCTGT
CCCGAGGGTAAGCTGTCCTGCGGCGACGGCGAGTGCCTGGACAAGGAGCT
CTTCTGCAACGGCAAGTCCGACTGCAAGGACGAATCCGATGAGAACGCCT
GCTCTGTCGATGAGGATCCCAACCGCGCCCCCGAATGCGATCCGACGCAG
TGCGCCCTGCCCGACTGCTTCTGCTCGGCGGACGGAACCCGCATTCCCGG
CGGCATTGAGCCCCAACAGGTGCCCCAGATGATCACGATCACCTTCAACG
GCGCCGTCAACGTGGACAACATCGACCTGTACGAGGACATCTTCAACGGA
CAGCGCCAGAATCCCAACGGCTGCTCCATCAAGGGCACCTTCTTCGTGTC
CCACAAGTACACCAACTACTCGGCGGTGCAGGACCTTCATCGTCGCGGAC
ACGAGATCTCCGTGTTCTCGCTAACGCACAAGGATGACCCCAACTACTGG
ACCGGCGGCAGCTACGACGACTGGCTGGCCCGAGATGGCCGGCTCCCGAC
TGATCGTGGAGCGCTTCGCCCACATCACCGACGGCTCCATCATCGGCATG
CGGGCGCCCTACCTCCGCGTGGGCGGCAACAAGCAGTTCGAGATGATGGC
CGATCAGTCTTCGTGTACGACGCCTCCATCACGGCTCCTTGGCCGCGTGG
CCATTTGGCATCACCCCTGTACTTCCGCATGCCGCACAGTGCACGGCAAC
TCGCAACAATGCCATACTAGGGACCCATCCCGGTGTGGGAGATGGGCTCT
GAACAGACTGGACGGGTCGACACAATCCTACTTC
FMO11538.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:42:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
verm-RH | 2183 | CG8756-RH | 114..1204 | 8..1095 | 5005 | 98 | Plus |
verm-RI | 2255 | CG8756-RI | 239..1276 | 61..1095 | 4740 | 97.9 | Plus |
verm-RG | 2165 | CG8756-RG | 388..1186 | 300..1095 | 3545 | 97.3 | Plus |
verm-RI | 2255 | CG8756-RI | 114..166 | 8..60 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:42:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19691069..19691656 | 1038..454 | 2625 | 98 | Minus |
3L | 28110227 | 3L | 19691809..19691958 | 453..304 | 750 | 100 | Minus |
3L | 28110227 | 3L | 19692721..19692853 | 303..171 | 665 | 100 | Minus |
3L | 28110227 | 3L | 19692981..19693095 | 174..60 | 575 | 100 | Minus |
3L | 28110227 | 3L | 19702222..19702487 | 733..465 | 500 | 79.9 | Minus |
3L | 28110227 | 3L | 19694973..19695025 | 60..8 | 265 | 100 | Minus |
3L | 28110227 | 3L | 19701967..19702061 | 988..895 | 185 | 82.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:42:47 has no hits.
FMO11538.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:17 Download gff for
FMO11538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
verm-RC | 102..1217 | 1..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:05 Download gff for
FMO11538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
verm-RF | 105..410 | 1..305 | 98 | -> | Plus |
verm-RF | 524..1333 | 306..1113 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:49 Download gff for
FMO11538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
verm-RH | 106..1221 | 1..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:49 Download gff for
FMO11538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19690995..19691656 | 454..1113 | 95 | <- | Minus |
3L | 19691809..19691958 | 304..453 | 100 | <- | Minus |
3L | 19692721..19692851 | 173..303 | 100 | <- | Minus |
3L | 19692983..19693094 | 61..172 | 100 | <- | Minus |
3L | 19694973..19695031 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:05 Download gff for
FMO11538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19684095..19684756 | 454..1113 | 95 | <- | Minus |
arm_3L | 19684909..19685058 | 304..453 | 100 | <- | Minus |
arm_3L | 19685821..19685951 | 173..303 | 100 | <- | Minus |
arm_3L | 19686083..19686194 | 61..172 | 100 | <- | Minus |
arm_3L | 19688073..19688131 | 1..60 | 93 | | Minus |