FMO11542.5prime Sequence
472 bp (472 high quality bases) assembled on 2012-05-14
> FMO11542.5prime
AATCAGACAGCGACAGGAGACGCGGCGCAATGTCAGAGTTCCCTTGGTTT
ACCTCGGCATAGGTGCTGTTGGTCTGTGCGCCATCTACCTGATCTTTGGC
TGGGGCGCCCAACTACTGTGCAACATCATTGGGGTTCTGTACCCTGCATA
TATTTCCATCCATGCCATCGAGTCCAGCACAAAGCAGGACGACACCAAGT
GGCTGATCTACTGGGTCACGTTTGGAATCTTCACCGTGATTGAATTCTTT
TCGAGTCTGCTAACTTCGGTGATTCCCTTTTACTGGCTGCTGAAGTGTGC
TTTCCTCATCTGGTGCATGCTGCCCACGGAACAGAATGGTTCTACCATCA
TCTACAACAAGCTGGTGCGACCCTACTTCCTGAAACATCACGAATCCGTT
GACAGGATCATCGATGATGGCATGAAGAAAGCCGCTGGAGTGCTGAAGCA
TGACGCAAGCTTTCTAGACCAT
FMO11542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:43:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8331-RB | 877 | CG8331-RB | 231..684 | 1..454 | 2270 | 100 | Plus |
| CG8331-RD | 846 | CG8331-RD | 261..653 | 62..454 | 1965 | 100 | Plus |
| CG8331-RC | 1023 | CG8331-RC | 438..830 | 62..454 | 1965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14172287..14172522 | 60..295 | 1180 | 100 | Plus |
| 3R | 32079331 | 3R | 25786726..25787057 | 408..77 | 1090 | 88.6 | Minus |
| 2R | 25286936 | 2R | 14172582..14172683 | 294..395 | 510 | 100 | Plus |
| 2R | 25286936 | 2R | 14171390..14171454 | 1..65 | 325 | 100 | Plus |
| 2R | 25286936 | 2R | 14172747..14172805 | 396..454 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:42:59 has no hits.
FMO11542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:19 Download gff for
FMO11542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8331-RB | 248..701 | 1..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:13 Download gff for
FMO11542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8331-RB | 231..684 | 1..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:55 Download gff for
FMO11542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8331-RB | 231..684 | 1..454 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:55 Download gff for
FMO11542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14171390..14171451 | 1..62 | 100 | -> | Plus |
| 2R | 14172290..14172522 | 63..295 | 100 | -> | Plus |
| 2R | 14172584..14172683 | 296..395 | 100 | -> | Plus |
| 2R | 14172747..14172805 | 396..454 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:13 Download gff for
FMO11542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10058895..10058956 | 1..62 | 100 | -> | Plus |
| arm_2R | 10059795..10060027 | 63..295 | 100 | -> | Plus |
| arm_2R | 10060089..10060188 | 296..395 | 100 | -> | Plus |
| arm_2R | 10060252..10060310 | 396..454 | 100 | | Plus |
