FMO11543.5prime Sequence
683 bp (683 high quality bases) assembled on 2012-05-14
> FMO11543.5prime
CACTCGACATGGTGGATCGCAGCGATAATGCGGAATCCTTCGACGACGCC
GTCGAGGAGCGCGTGATCAATGAGGAGTATAAGATTTGGAAAAAGAACAC
GCCGTTCCTGTACGATCTGGTCATGACGCATGCCCTGGAATGGCCCTCGT
TGACTGCCCAGTGGCTGCCGGACGTGACCAAGCAGGATGGCAAGGACTAC
TCGGTACATCGTCTTATACTGGGCACACACACATCTGACGAGCAGAACCA
TCTACTCATCGCCAGCGTTCAGTTGCCCAGCGAGGATGCCCAGTTCGATG
GTTCGCACTACGATAACGAGAAGGGCGAGTTTGGAGGCTTTGGATCGGTG
TGCGGCAAAATCGAAATCGAGATTAATATCAACCACGAGGGCGAAGTGAA
CAGGGCCCGCTACATGCCCCAGAACGCCTGTGTAATCGCCACCAAGACGC
CGTCGAGTGATGTCCTGGTCTTCGACTACACGAAGCATCCCAGCAAGCCG
GAACCGTCTGGCGAGTGCCAGCCTGACCTGCGGCTGCGCGGTCATCAAAA
GGAAGGCTACGGACTCTCTTGGAATCCCAACCTTAATGGCTATTTGCTGT
CAGCCTCTGATGATCACACCATCTGCTTGTGGGACATCAATGCCACACCC
AAGGAGCATAGGGTTATTGATGCCAAGAAAATC
FMO11543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caf1-RB | 1825 | CG4236-RB | 312..992 | 3..683 | 3345 | 99.4 | Plus |
Caf1-RA | 1828 | CG4236-RA | 312..995 | 3..683 | 3305 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15225968..15226527 | 30..589 | 2770 | 99.6 | Plus |
3R | 32079331 | 3R | 15226629..15226731 | 581..683 | 470 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:43:04 has no hits.
FMO11543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:20 Download gff for
FMO11543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RB | 320..1001 | 1..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:14 Download gff for
FMO11543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RB | 311..992 | 1..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:56 Download gff for
FMO11543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RB | 311..992 | 1..683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:56 Download gff for
FMO11543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15225886..15225914 | 1..30 | 93 | -> | Plus |
3R | 15225969..15226526 | 31..588 | 99 | -> | Plus |
3R | 15226637..15226731 | 589..683 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:14 Download gff for
FMO11543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11051608..11051636 | 1..30 | 93 | -> | Plus |
arm_3R | 11051691..11052248 | 31..588 | 99 | -> | Plus |
arm_3R | 11052359..11052453 | 589..683 | 98 | | Plus |