Clone FMO11543 Report

Search the DGRC for FMO11543

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:115
Well:43
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCaf1-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11543.5prime Sequence

683 bp (683 high quality bases) assembled on 2012-05-14

> FMO11543.5prime
CACTCGACATGGTGGATCGCAGCGATAATGCGGAATCCTTCGACGACGCC
GTCGAGGAGCGCGTGATCAATGAGGAGTATAAGATTTGGAAAAAGAACAC
GCCGTTCCTGTACGATCTGGTCATGACGCATGCCCTGGAATGGCCCTCGT
TGACTGCCCAGTGGCTGCCGGACGTGACCAAGCAGGATGGCAAGGACTAC
TCGGTACATCGTCTTATACTGGGCACACACACATCTGACGAGCAGAACCA
TCTACTCATCGCCAGCGTTCAGTTGCCCAGCGAGGATGCCCAGTTCGATG
GTTCGCACTACGATAACGAGAAGGGCGAGTTTGGAGGCTTTGGATCGGTG
TGCGGCAAAATCGAAATCGAGATTAATATCAACCACGAGGGCGAAGTGAA
CAGGGCCCGCTACATGCCCCAGAACGCCTGTGTAATCGCCACCAAGACGC
CGTCGAGTGATGTCCTGGTCTTCGACTACACGAAGCATCCCAGCAAGCCG
GAACCGTCTGGCGAGTGCCAGCCTGACCTGCGGCTGCGCGGTCATCAAAA
GGAAGGCTACGGACTCTCTTGGAATCCCAACCTTAATGGCTATTTGCTGT
CAGCCTCTGATGATCACACCATCTGCTTGTGGGACATCAATGCCACACCC
AAGGAGCATAGGGTTATTGATGCCAAGAAAATC

FMO11543.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Caf1-RB 1825 CG4236-RB 312..992 3..683 3345 99.4 Plus
Caf1-RA 1828 CG4236-RA 312..995 3..683 3305 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15225968..15226527 30..589 2770 99.6 Plus
3R 32079331 3R 15226629..15226731 581..683 470 97.1 Plus
Blast to na_te.dros performed on 2014-11-28 02:43:04 has no hits.

FMO11543.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:20 Download gff for FMO11543.5prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-RB 320..1001 1..683 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:14 Download gff for FMO11543.5prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-RB 311..992 1..683 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:56 Download gff for FMO11543.5prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-RB 311..992 1..683 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:56 Download gff for FMO11543.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15225886..15225914 1..30 93 -> Plus
3R 15225969..15226526 31..588 99 -> Plus
3R 15226637..15226731 589..683 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:14 Download gff for FMO11543.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11051608..11051636 1..30 93 -> Plus
arm_3R 11051691..11052248 31..588 99 -> Plus
arm_3R 11052359..11052453 589..683 98   Plus