Clone FMO11545 Report

Search the DGRC for FMO11545

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:115
Well:45
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG33108-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11545.5prime Sequence

566 bp (566 high quality bases) assembled on 2012-05-14

> FMO11545.5prime
CAGTCGACATGTCGAATATTTCAAGTGTGGCACCACCTCCTCCCCCACCA
CCCATGATAGTCACTCCTAGCACACCTGCTACCACAAAGGAACGTCCAGT
TGGGGACAATATAACCACCGATGAGTGCACTTGGGCATGTGAGTATCCTG
AGGTGCAGAAAGGATGCTATTTAAGTCGCGTCTGCCAATATACACCACCG
AAACACTGTCAATACTACTCCGTAAACAGCATAGTGCAGGTGGGACCTAC
TTGTGGCTTAGTGGCCCTCAGCATGTTGCTTGGTGGCAGTCCCACGGCAG
ATGATCTCCTCAAGGATGCAATCGACCAGGAGTATACCCTTAATGGTGAA
CTATTTAGTGCTCAGTATTTGTTTGAACTGACCCGGAAGCATATGCCAGG
ACCTGCTGCGTGTCAGTTGCATGTAGGTCCTTTGGACTGCAAAAAAGTCA
AGGAACTTTTAAAGGCCGGAGGCTGCCTACTAGTGCCGTATCCTTTTTCA
AAAATATTGCCATTTAAACCCGGGTTGAGTTTGGTATTCCCCTGCATTGC
AAGCTTTCTAGACCAT

FMO11545.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG33108-RB 725 CG33108-RB 77..617 8..548 2705 100 Plus
CG33108-RA 931 CG33108-RA 77..556 8..487 2400 100 Plus
LSm3-RA 643 CG31184-RA 1..79 470..548 395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23996030..23996340 238..548 1555 100 Plus
3R 32079331 3R 23995735..23995969 8..242 1175 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:43:12 has no hits.

FMO11545.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:22 Download gff for FMO11545.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33108-RB 66..612 8..554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:17 Download gff for FMO11545.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33108-RB 77..623 8..554 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:00 Download gff for FMO11545.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33108-RB 77..623 8..554 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:00 Download gff for FMO11545.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23995735..23995966 8..239 100 -> Plus
3R 23996032..23996346 240..554 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:17 Download gff for FMO11545.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19821457..19821688 8..239 100 -> Plus
arm_3R 19821754..19822068 240..554 99   Plus