FMO11549.5prime Sequence
1126 bp (1010 high quality bases) assembled on 2012-05-14
> FMO11549.5prime
CAGTCGACATGTTTAGGATCCACCTCAAGATGGGTCCCCAACGCAACCAG
CTCCACAGCAACAACAACAATGGTGCCGCCGGAAGTAGCAGCAGCACCGG
AAACCGTCACCTGAAGGAGTTCACCTGCTGCTTCGGCCTGCATGTCCACA
CGGCCACTTTGATGATCGGATTGTGGCACCTGTTCTTGAACATATTGGCG
CTAAGCGTTCTAGCGGTCATATGGCGCAATCCGGAGATGATGGACGAACT
GGAAGGTGGCACCCACGACTACACCGTGGATCTGAGTGCACCGGCCCTAC
CCACGCCCCTTAGCAAGGTCGAACCGCCCTACGCCTACCGTGACCACTCC
CTCAACTATCGTAAGCGTTACCAGAACTTCGATATGGGCGGACTGGTGTG
CACCTGCATGATAGCCATTACACTGATGATGATCTACGGAACCATCAAGG
GAAAACCCTCCCACCTGTTGCCGTTCTTCTGTTTGCAATTGTTTGATTTC
GCTATTACAACTCTCACCGCCGCTGGATATCTGTGCTACCTGCAGGCCAT
TCACAGCATCATTGCCGAGTCGCATCGCTTGCCGTGGCGCGAGAAGCTGC
TAGAACTACCACCTGAGGAGCTAGTTGTTGTTGTCCTGGTCGTATTCATC
TGCATTGTGTTTCTAAAGGCCTATTGCATTGGTATCGTTTGGCGCTGCTA
CAAGTACTTGACGCTCCGTCAGCAACACGTTCGCACCCTGTTCCCCTTCC
TGGAGCCACCGACTGGAGTCCACAGTGTTGGCGGAACCTTTGGTGCCGAA
GAGCGGTCTTACTCCACTCTGTTGCCCAATTACGATGAAGCGATTGCCCA
GTACTTGAAGCAGGCACCACCGCCATCTTATCAGTGGCCATGTCAACTAC
GAGAGGGTGAAGACGCAGCTGTTGGAGGTGCGGAGTTATCCTTCGGTGGC
CCCTCTCTCGTGGCCCTTGAGCAGCCACTACGCGAACGTAGCCTCCACAC
GGATGACACATGATAATACATGATCAGCCGACATACACACCTATTGCATT
GTCAATGCATACGCCACAATGCTCGGCACGAATGCCACTGTACGCTATGT
CACCAGGACGGACATTTGAGTATTGA
FMO11549.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14767-RB | 2043 | CG14767-RB | 68..1103 | 9..1031 | 4855 | 98.7 | Plus |
| CG14767-RC | 2132 | CG14767-RC | 157..1192 | 9..1031 | 4855 | 98.7 | Plus |
| CG14767-RA | 2120 | CG14767-RA | 157..1180 | 9..1031 | 4665 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8718984..8719489 | 1008..512 | 2100 | 98 | Minus |
| 2R | 25286936 | 2R | 8719843..8720033 | 372..182 | 955 | 100 | Minus |
| 2R | 25286936 | 2R | 8723257..8723430 | 182..9 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 8719646..8719784 | 511..373 | 695 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2388 | 36..110 | 127 | 65.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 136..196 | 35..94 | 122 | 68.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9166..9226 | 35..94 | 122 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6839 | 39..128 | 110 | 59.3 | Plus |
FMO11549.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:24 Download gff for
FMO11549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RB | 195..1252 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:27 Download gff for
FMO11549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RC | 151..1208 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:08 Download gff for
FMO11549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14767-RC | 151..1208 | 1..1044 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:08 Download gff for
FMO11549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8719843..8720032 | 183..372 | 100 | <- | Minus |
| 2R | 8723257..8723436 | 1..182 | 97 | | Minus |
| 2R | 8719646..8719784 | 373..511 | 100 | <- | Minus |
| 2R | 8718996..8719489 | 512..997 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:27 Download gff for
FMO11549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4606501..4606994 | 512..997 | 98 | <- | Minus |
| arm_2R | 4607151..4607289 | 373..511 | 100 | <- | Minus |
| arm_2R | 4607348..4607537 | 183..372 | 100 | <- | Minus |
| arm_2R | 4610762..4610941 | 1..182 | 97 | | Minus |
