Clone FMO11550 Report

Search the DGRC for FMO11550

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:115
Well:50
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42561-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11550.5prime Sequence

410 bp (410 high quality bases) assembled on 2012-05-14

> FMO11550.5prime
CAGTCGACATGTCTCGCGATTTTTTCGCGCTGTTGGCAATTTTCATCTTC
ACTGCGGTCAACGCGGCACCGCAAATTTCACCAACTATCGTTCCGCAAAT
CCGCACAAATGGCTTTCAACTTGAGCCCCTCAATCAAGAATACTTTCTCA
GAATCGAACATCCGGGTGGCACTATTCGCCAGGAATCCGTGAGCCAGAAT
GAAGCCGGACATCTGCAGGTTAAAGGTGTGATTAACCAGCCCTTCGAGGA
TCAGGATGCCAATCTTATTGTCACCTATGAGGCTGGTCCGAATGGATATG
TTGCCAAATACAGCTTCGGCAAGGGTCCTCCAACACCGCCTCCTGACACA
CCATTATTCCTCAGTCCCGGTGCTCTGAAAACTGCAGCGGGAGCAAGCTT
TCTAGACCAT

FMO11550.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG42561-RA 566 CG42561-RA 29..413 8..392 1925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17685153..17685395 150..392 1215 100 Plus
2R 25286936 2R 17684973..17685095 29..151 615 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:43:34 has no hits.

FMO11550.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:25 Download gff for FMO11550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42561-RA 158..558 1..401 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:29 Download gff for FMO11550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42561-RA 21..421 1..401 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:10 Download gff for FMO11550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42561-RA 21..421 1..401 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:10 Download gff for FMO11550.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17684974..17685095 30..151 100 -> Plus
2R 17685155..17685403 152..401 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:29 Download gff for FMO11550.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13572479..13572600 30..151 100 -> Plus
arm_2R 13572660..13572908 152..401 98   Plus