Clone FMO11553 Report

Search the DGRC for FMO11553

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:115
Well:53
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG34214-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11553.5prime Sequence

470 bp (470 high quality bases) assembled on 2012-05-14

> FMO11553.5prime
CAGTCGACATGGCTCCTCGAGAGAAAGTTGAATTTGTGCTGGTGCGCCTG
GCCTTTGTTCCTTACATAAATCCTCTGTACCCGCGCATCAGCTACCAGAT
CAGAAAGCACGCTCCCACCGGATCGATTATCCAAGTGCGCGATTGGTTCG
AGCATGTGATGATGAGGGAGCGCTCCAAGCTGCCCCCAGATGCTAACATA
CGCTACGCAGAGTGGCGCATCATCACCGGCGACATGGAGCTGTTTCAGGT
GCAGGGCGTCCGCTTCGACAAGATCATGCTGGTGCTGGGCGAAGAAAACA
TCTCGTGGGTCTTCTATCAGAACACGCCACTTTTCCGCCGTATCGAGGGC
AGCGCCTGCTTCCCTGTTAGCTACTGCGGATGCTGCCTGAACAACCAGTA
CCTGGATATTATGGCCAAAATCAAGCAAACTGTGTCGAGGAAAAAGATAC
GAGCAAGCTTTCTAGACCAT

FMO11553.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG34214-RA 537 CG34214-RA 67..510 9..452 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24665454..24665838 452..68 1925 100 Minus
2R 25286936 2R 24665898..24665956 67..9 295 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:43:46 has no hits.

FMO11553.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:27 Download gff for FMO11553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34214-RA 58..512 1..456 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:35 Download gff for FMO11553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34214-RA 60..514 1..456 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:16 Download gff for FMO11553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34214-RA 60..514 1..456 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:16 Download gff for FMO11553.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24665449..24665838 68..456 99 <- Minus
2R 24665898..24665963 1..67 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:35 Download gff for FMO11553.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20552972..20553361 68..456 99 <- Minus
arm_2R 20553421..20553486 1..67 94   Minus