Clone FMO11556 Report

Search the DGRC for FMO11556

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:115
Well:56
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42779-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11556.5prime Sequence

209 bp (209 high quality bases) assembled on 2012-05-14

> FMO11556.5prime
CAGTCGACATGAAGTTTTTTGCCATCCTCCTCCTTTTGTGCACCATGGTA
GCTGTTGCAATTGCCGCAACAACCACAACCACAACGGAGAACATTGATTG
GGGTTCTGCAAGTACAACTGAAATACCGGCAACAACTACAGCAACTCCAT
GTGAATCAGCTGACGCCAAGAAATTATATTTCTTTTATAAAGCAAGCTTT
CTAGACCAT

FMO11556.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG42779-RA 256 CG42779-RA 15..199 7..191 895 98.9 Plus
CG42779-RB 511 CG42779-RB 15..199 7..191 895 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17121591..17121775 7..191 895 98.9 Plus
Blast to na_te.dros performed on 2014-11-28 02:43:58 has no hits.

FMO11556.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:29 Download gff for FMO11556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42779-RA 1..186 9..195 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:40 Download gff for FMO11556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42779-RA 10..202 1..195 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:21 Download gff for FMO11556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42779-RB 10..202 1..195 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:21 Download gff for FMO11556.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17121586..17121778 1..195 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:40 Download gff for FMO11556.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12947308..12947500 1..195 96   Plus