Clone FMO11557 Report

Search the DGRC for FMO11557

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:115
Well:57
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13040-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11557.5prime Sequence

581 bp (581 high quality bases) assembled on 2012-05-14

> FMO11557.5prime
CAGTCGACATGTTCCGCTTCATTGCTATCTGTGCCCTGGCCACCATTGTC
GCCGCTGCACCGGGATTCATTGAGGAGCACCCCGTGGCCGTCGCCCCAGT
TGTGGCCAAAGTAGGTGCCGTGGTGCACAGTGCCCCACTGGCCACCTCCC
ACCAGAGCTTCACCCAGTACCACAACCAGGCGGTGCTCACTCCCGTGGTG
AAGCATGTGGTGCCAGCTGTTCCCGTGATTAAGACTGTGGCTCCAGTGGT
TCCTGTGGTCAAGCATGTGGCTCCCATCGTGCCCGTGGTCAAGCAAGTGG
CTCCCATCGTGCCCGTGGTCAAGCACGTGGCTCCAGTGGTTCCCGTCATC
AAGACTGTGCCCGTGGTGCACCACCAGACCTACGTCGCACCCGCTGTCCA
CCATGTGGCCGCCGTGCCCGTGGTGAAGGCTCTACCCCATGCCGTCTCCC
ACCAGAGCCACACCCAGGTGCACCACCAGAAGACCATCATCACCCCGGTG
GTTGCTCCTGTGGTCAAGACTGTCGCCGTCGCCGCTGCTCCAGTGGCCCA
TGTCTACCATCATGCAAGCTTTCTAGACCAT

FMO11557.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13040-RB 1419 CG13040-RB 797..1353 7..563 2785 100 Plus
CG13040-RA 659 CG13040-RA 37..593 7..563 2785 100 Plus
CG13040-RB 1419 CG13040-RB 981..1113 221..353 275 80.5 Plus
CG13040-RB 1419 CG13040-RB 1011..1143 191..323 275 80.5 Plus
CG13040-RA 659 CG13040-RA 251..383 191..323 275 80.5 Plus
CG13040-RA 659 CG13040-RA 221..353 221..353 275 80.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16325149..16325691 563..21 2715 100 Minus
3L 28110227 3L 16325359..16325491 323..191 275 80.5 Minus
3L 28110227 3L 16325389..16325521 353..221 275 80.5 Minus
Blast to na_te.dros performed on 2014-11-28 02:44:02 has no hits.

FMO11557.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:30 Download gff for FMO11557.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13040-RA 30..596 1..564 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:43 Download gff for FMO11557.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13040-RA 30..593 1..563 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:23 Download gff for FMO11557.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13040-RA 30..593 1..563 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:23 Download gff for FMO11557.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16325149..16325691 21..563 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:43 Download gff for FMO11557.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16318249..16318791 21..563 100 <- Minus