Clone FMO11561 Report

Search the DGRC for FMO11561

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:115
Well:61
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCpr30F-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11561.5prime Sequence

464 bp (464 high quality bases) assembled on 2012-05-14

> FMO11561.5prime
CAGTCGACATGTTCGCTCTCGTATCGCTTTTCATCCTGGGTGTTGGTGCC
GCCGCCGCCATCGAGCTGCCCATCTACCACTCACCCGCGGCCATTGTGAA
GCCACTGCTGAAGACCGTAGAGGTGGAGGCACCTGCCCACTACGATTTCG
CCTACTCGGTGCACGACGAGCACACCGGCGACATCAAGAGCCAGACGGAG
TCGCGGAAGGGCGATCAGGTCCAGGGTCAGTACACGCTGGTCGATGCCGA
TGGCTATCTGCGCACCGTGGACTACACTTCGGATGCCCACAACGGCTTCA
ATGCGGTGGTGCGTCGCGATCCCCTGGGCCAGAAGGTGATCAAGGCTGCG
CCCATTGCCAAGCTCCTGGCTCCCGCACCACTGCCACTGGCCTATGCGGC
ACCCAAGCTCCTCGCGCCCGCTAAACTGCCCCTCGGCCTTTACCATGCAA
GCTTTCTAGACCAT

FMO11561.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr30F-RA 827 CG31876-RA 72..509 9..446 2190 100 Plus
Cpr30B-RA 711 CG3818-RA 196..324 171..299 240 79.1 Plus
Cpr64Ab-RA 552 CG15007-RA 225..363 174..312 230 79.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9932590..9933018 446..18 2145 100 Minus
2L 23513712 2L 9543143..9543271 171..299 240 79.1 Plus
3L 28110227 3L 4211069..4211207 312..174 230 77.7 Minus
3R 32079331 3R 6687190..6687298 219..327 215 79.8 Plus
Blast to na_te.dros performed on 2014-11-28 02:44:19 has no hits.

FMO11561.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:32 Download gff for FMO11561.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr30F-RA 1..441 9..447 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:53 Download gff for FMO11561.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr30F-RA 60..503 9..454 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:29 Download gff for FMO11561.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr30F-RA 72..515 9..454 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:29 Download gff for FMO11561.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9932584..9933026 9..454 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:53 Download gff for FMO11561.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9932584..9933026 9..454 98   Minus