FMO11565.5prime Sequence
290 bp (290 high quality bases) assembled on 2012-05-14
> FMO11565.5prime
CAGTCGACATGACCGATACCAGTGCAAATAATTTGGATGTATCGGTGGAT
GTGGTCTGGCCGACGATAATTGTCCTGGCCATGCTGGTCATAAATGGCTT
CGTTTTCGCCTACATTATGCGCAAGCGGCGGGAATACAAATGCCAGGAGG
AGGAGCTGCAGCAACAACAACAACCTGTTCCACATTCCTCCTATGCGGCC
ACTTCGACAACGGAACGGCATGCGGATGCGGATCAGGAGGACGATAGCTG
TGCCATCGAGATGGAGCGACTGGCAAGCTTTCTAGACCAT
FMO11565.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42806-RB | 803 | CG42806-RB | 267..530 | 9..272 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13964919..13965182 | 9..272 | 1320 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 973..1014 | 136..177 | 102 | 71.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1127..1159 | 144..176 | 102 | 78.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2430 | 144..174 | 101 | 80.6 | Plus |
FMO11565.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:35 Download gff for
FMO11565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42806-RB | 245..515 | 1..272 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:02 Download gff for
FMO11565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42806-RB | 260..530 | 1..272 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:35 Download gff for
FMO11565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42806-RB | 260..530 | 1..272 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:35 Download gff for
FMO11565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13964912..13965182 | 1..272 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:02 Download gff for
FMO11565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9852417..9852687 | 1..272 | 98 | | Plus |
