FMO11576.5prime Sequence
1083 bp (1051 high quality bases) assembled on 2012-05-14
> FMO11576.5prime
CAGTCGACATGCAGGGCCCAATTCAAAGGTTGGTGTACACATTTGGTCAT
CGCACCTGTAGCCAATTGCCGATGATCGGCGGAGCAACGATATCCCAAAC
AAAACCAACAACAATGGCTCTCTCCGTTCGCCAATCCTCCTCCTCCGTGC
TGGCCACGGAGTCCTCTAACAAGGGAATGATTATTCTGAACCGGCCCAAG
GCGCTTAACGCCATCAACTTGGAGATGGTACGCAAGATCTACAAGCACCT
GAAGAAGTGCGAGAAGTCCAAGTCGCTGGTGATCATCAAGGGCACAGGTG
ACAAGGCCTTCTGCGCCGGTGGAGATGTGCGCGCTCTGGTCGAGGCTGGC
CCTACGGATGAGTCGAAGAGCTTCTTCCGGGAGGAGTACAGCACGAATGC
CCTGATCGGAAACTATAAGATTCCCTACATCGCCATCATTGACGGTATTA
CCATGGGCGGTGGCGTGGGTCTGAGTGTGCATGGCAAGTACCGGGTGGCC
AGCGATCGGACACTGTTCGCCATGCCCGAGACGGCGATTGGCCTCTTCCC
GGATGTGGGTGGATCATACTTCCTGCCTCGACTGCAGGGAAAGCTGGGCC
TCTATCTGGGTCTCACAGGATATCGACTGCGCGGAGCCGATGTCTATTAC
TCAGGCATTGCTACGCACTACTGCGAGAGCAGCAAGATCCCTGATCTGGA
GACGGCTCTCCTTAACTGCCCGGATGCGGATGATGTTCCTGAGCTGCTGC
AGAAGTACCATTCCCCGCCAGAAAAGCCCTTCTCGCTGCAGCCTGTCCTG
GAGCAGATCAACAAGAATTTTTCAGCGGACTCGGTGGAGGGGATTCTAGA
GAATCTGCAGAACGATGGCAGTGAATGGGCCAAGAAGACGCTTGAGACGC
TCTCGAAGATGTCTCCCACCTCGATGAGGTACGTTCCGTCAGTGGAGCTC
GGATCACAGCTGTCCGCTGGCTCATTGTCTTATTATGGGAATATCGTCTG
GCCGTGCGTCATCTGGAGCGAGTGATTTCAAGGAAGGGAGTGCGCCGCCC
TACTCCATCGGACAAGGATCAGAAGGCCAGATG
FMO11576.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5044-RB | 1702 | CG5044-RB | 90..1154 | 9..1075 | 5060 | 98.8 | Plus |
| CG5044-RA | 1699 | CG5044-RA | 92..1151 | 14..1075 | 5035 | 98.8 | Plus |
| ldlCp-RA | 3015 | CG6177-RA | 2781..2959 | 1075..895 | 660 | 94.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15357389..15358274 | 11..896 | 4400 | 99.8 | Plus |
| 3R | 32079331 | 3R | 15358537..15358688 | 895..1045 | 430 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:45:13 has no hits.
FMO11576.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:42 Download gff for
FMO11576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5044-RB | 65..1146 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:25 Download gff for
FMO11576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5044-RB | 81..1162 | 1..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:37:53 Download gff for
FMO11576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5044-RB | 81..1162 | 1..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:37:53 Download gff for
FMO11576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15357382..15358274 | 1..896 | 99 | -> | Plus |
| 3R | 15358539..15358723 | 897..1083 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:25 Download gff for
FMO11576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11183104..11183996 | 1..896 | 99 | -> | Plus |
| arm_3R | 11184261..11184445 | 897..1083 | 92 | | Plus |
