Clone FMO11580 Report

Search the DGRC for FMO11580

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:115
Well:80
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11029-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11580.5prime Sequence

1140 bp (1021 high quality bases) assembled on 2012-05-14

> FMO11580.5prime
CAGTCGACATGGCTAGCATTACCTATGCATTGTGTCTGTGCTCGTTGTTT
ATATTATTCTCGCCTCTTGTGTCCGCGAATCGGCGTGTCCGGCGACAAAA
TCGATCCGATCGCCTGCTGGCCGACATCGGAGTACGTGCCCAGTCCTACG
ATCCCCGTGTGCCGGAAAATGGCATTCAGCAGTACACCGACATCGACCAG
GATCTGCGCCATCTGTTCCTGAACACCAGGCAGACCACGCTGAAATGGGC
CCTTAACAACATCGAGGCGCTGAGCAGTCGCGGCAGACGCGAGGGAAAGC
TCCAGGCTCCGGTGTCCAAGAAGGTGCCCTTCCTGTGTCCCACTAACAAC
ACACGCTCCCCGAGTCCGCCCACTTCCATAGAGCACCTCAGGCCGGGTGA
TATTGACATCATAGCTGCCTTTGGCGACTCCCTGTCCGCAGGCAACGGAA
TACTTTCCAACAATGCCATCGACATGATCAACGAGTTCCGTGGTCTGACC
TTCTCCGGTGGCGGTCTGGCCAACTGGCGAAGATTCGTCACCCTGCCGAA
CATCCTGAAGATCTTTAATCCCAAACTGTACGGTTTCGCGGTGAGCAACA
GCCTGGTGATCAACCACCGATCGTCGCGACTTAACATCGCCGAGCCGATG
ATCATGTCGCGGGATCTGCCCTTCCAGGCTCGCGTACTCATCGATCTGCT
GCGACGCGATCGCCATGTGGACATGAAGCGGCACTGGAAGCTGTTGACAG
TGTATGTGGGAAACAACGACATCTGCTCCGACCTGTGTCACTGGGACACG
CCGCAGAGCTTCCTCGATCAGCACGCCCGCGATCTGCGCCAGGCATTCCG
GCTGCTGCGCGACCATGTGCCGCGCCTGCTTATCAATTTAATTGTGTTGC
AAACATCCCGCTGGTGTTGAGCACCATGACCAAAGTGCCGCTGCAGTGCT
TCGTGATGCATCGTGTGGGGTGCAACTGTCTGATTCACGACCGCCTGACC
GCACCGAAGTTCAATGACGCCATGGAAACCCTGACGCGTTTGGCAGCAGC
CTGAACATTGAAGATTTCGCCCCGACTGCCGGAATTTCCGTCGCAGAAAC
TTCCCATACCGTCGCCCCATCCAATGCCTGAAACAAACTA

FMO11580.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11029-RA 1805 CG11029-RA 117..1231 5..1127 5015 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5746273..5747309 5..1040 4890 98.7 Plus
Blast to na_te.dros performed on 2014-11-28 02:45:29 has no hits.

FMO11580.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:44 Download gff for FMO11580.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11029-RA 1..1055 9..1065 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:35 Download gff for FMO11580.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11029-RA 113..1175 1..1065 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:00 Download gff for FMO11580.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11029-RA 113..1175 1..1065 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:00 Download gff for FMO11580.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5746269..5747331 1..1065 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:35 Download gff for FMO11580.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5746269..5747331 1..1065 98   Plus