Clone FMO11586 Report

Search the DGRC for FMO11586

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:115
Well:86
Vector:pMK33-CFH-BD
Associated Gene/Transcriptp24-2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11586.5prime Sequence

758 bp (758 high quality bases) assembled on 2012-05-14

> FMO11586.5prime
CAGTCGACATGCGCGACCAATTCATCAGCCTGGCCCTGATTCTGTGCGTC
CTGCACAGCGCCTGCGGCTTGTACTTCCACATATCGCAGACGGAGCGCAA
GTGCTTCATCGAGGAGGTTCCCGACGAGACAACTGTGATTGTTAACTACA
AGGTAGAGCTGTATGATCCGCGCTCTAATGGATTCATGCCCTCGTCGCCC
GGAATCGGCATGCATGTGGAAGTACGCGACAGCGACGACAAGATTGTGCT
GTCCCGCGTGTACAGCTCACAGGGCCGCATCTCGTTCACCTCGCACACTC
CTGGCGAGCACGTCATCTGCATGTTCTCGAACAGCACCGCGTGGTTCAGT
GGTGCCCAGCTGCGTGTTCACCTGGACATCCAGGTGGGAGAGCACGCTAT
CGACTACGCCCATGTGGCGCAGAAGGAGAAACTGACTGATCTGCAGCTGC
GCATCCGCCAGCTACTTGACCAGGTGGAGCAGATCACCAAGGAGCATAAC
TACCAGCGATACCGCGAGGAGCGGTTCCGTCACACCAGCGAGAGCACCAA
CTCCCGCGTGCTCTGGTGGTCGCTGGCCCAGACCGTCGTCTTGGTTTGCA
TGGGCTTCTGGCATCTATTTAACCTGTTCCACACTTGTGTGTACATTAAC
GAGCAGTGTTTGTGTGTGTGCTGTCTTTATATAAAGAAAATATCTGCCCT
TGGCCTTATCAATGATAAGATTAATGGCTTGCCAGACCCGGCAAGCTTTC
TAGACCAT

FMO11586.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
Unc-115b-RE 3535 CG31332-RE 77..808 9..740 3630 99.7 Plus
p24-2-RB 3535 CG33105-RB 77..808 9..740 3630 99.7 Plus
p24-2-RA 830 CG33105-RA 96..827 9..740 3630 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9691906..9692505 740..141 2970 99.7 Minus
3R 32079331 3R 9684713..9685185 613..141 2335 99.6 Minus
3R 32079331 3R 9692567..9692699 141..9 665 100 Minus
3R 32079331 3R 9685247..9685379 141..9 650 99.2 Minus
3R 32079331 3R 9699792..9699920 740..612 645 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:45:50 has no hits.

FMO11586.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:48 Download gff for FMO11586.5prime
Subject Subject Range Query Range Percent Splice Strand
unc-115-RE 68..808 1..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:45 Download gff for FMO11586.5prime
Subject Subject Range Query Range Percent Splice Strand
Unc-115b-RE 68..808 1..740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:08 Download gff for FMO11586.5prime
Subject Subject Range Query Range Percent Splice Strand
p24-2-RA 87..830 1..743 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:08 Download gff for FMO11586.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9691906..9692504 142..740 99 <- Minus
3R 9692567..9692707 1..141 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:45 Download gff for FMO11586.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5517628..5518226 142..740 99 <- Minus
arm_3R 5518289..5518429 1..141 97   Minus