FMO11588.5prime Sequence
761 bp (761 high quality bases) assembled on 2012-05-14
> FMO11588.5prime
CAGTCGACATGAACACAGCAAGATGGATAGTACTGTGTATCGTTTTGATG
TTTTACCAGGGATCTGCCCAGACTCTGGAGGAGGATTGCGTAGACCACAT
GGAGCGGATTAATGGATCAAGCTATGCTCCCTGGCTGGCTGAAATTCTAT
CGGATTCTAAAGTAATTTGCGCTGGAGCACTCATAAATAATCTTTATGTT
CTAACAGCTGCGAGTTGTTTTAAAGAGAATGAAAAACTAACTGTTCGCTT
GGGCAGTGGCTATTTTGATAAAAGCTACGAAAATTTCCGAGTAACAAAGG
CTTACTTTTGGATGACACATTTCCCGGCCAACAATACGAATAATTTGTGT
ATCTTTCGGTTGCAAACGGAAGTGGAATTTAAGACCCACATTCGACCGAT
GTGTATCACAAAAAGTCCTAAAAGCCTTGGATTGGCGACCACTTTTGAAA
TTATCAATGAAAAGCCCAAAATGTGGTACTTTTGTAAAAACATAAAAGGT
TTATTCTGTAAATATGTTTTCGGAGAAAATGAAGAAAAATGGCAGTCCAA
ACCCACTGGAAGTCCTTGGACTGAAACAATCTCAAACGGTCCTTTCAAGG
GACTTGTACGATATGGAATCCTGAGCTATCGTGATAACAAAACCTATGAT
GAGGTTTATATAAATGTTATGTCTCATATTAACTGGATAGCTCAAATCTC
GTTAGAGATTGATATAAGTACTCCAGTCAAGAAAAAAGAATATGCAAGCT
TTCTAGACCAT
FMO11588.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43124-RA | 784 | CG43124-RA | 30..764 | 9..743 | 3675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:45:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28263891..28264395 | 743..239 | 2525 | 100 | Minus |
| 3R | 32079331 | 3R | 28264557..28264744 | 196..9 | 925 | 99.5 | Minus |
| 3R | 32079331 | 3R | 28264455..28264500 | 238..193 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:45:59 has no hits.
FMO11588.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:49 Download gff for
FMO11588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43124-RA | 21..767 | 1..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:50 Download gff for
FMO11588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43124-RA | 21..767 | 1..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:12 Download gff for
FMO11588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43124-RA | 21..773 | 1..752 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:12 Download gff for
FMO11588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28263882..28264395 | 239..752 | 99 | <- | Minus |
| 3R | 28264455..28264500 | 193..238 | 100 | <- | Minus |
| 3R | 28264561..28264753 | 1..192 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:50 Download gff for
FMO11588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24090177..24090222 | 193..238 | 100 | <- | Minus |
| arm_3R | 24090283..24090475 | 1..192 | 97 | | Minus |
| arm_3R | 24089604..24090117 | 239..752 | 99 | <- | Minus |
