FMO11592.5prime Sequence
845 bp (845 high quality bases) assembled on 2012-05-14
> FMO11592.5prime
CAGTCGACATGGGCGGAAGTGCCAGAGGCGTGGGGCGGAGGGGCGTGGTC
CTGGAGCAGGATGTACGCACAAGGTCGTCGCAGGGGGAGCGAAAGAGGGG
GCTCGCTGGCAAACAGCAGCACAACAATGCCAAGCTTCCGCTTAGGATGC
GCTCGAACGGAAGTTATTTTGGCCGCCTGAACGTGAGCGCGCTGCTCATC
TACTTGTGGTGCTATCTGCTACTGGTTATGGCAGCATCTGGCGGCAGCAA
CCACGTGGTAAATGGCCTCAAATGCTATTGCAATCCGAAGGAGTGCGACG
TGATCCGCTCACCCGACTGCCCCGGAAAAGGACTTATGCTGTGGGATCCA
TGCAAATGTTGCCGCATATGCGCCAAAACTTTGGGCGAATCCTGCGGCGG
TCCGGGCGGATTTTCCGGTCAATGTGAGCCGCCCCTGCAGTGTGTGACCA
AGCTGCCCATTAGCAGCGGATTGGGCGTGTGCATGGATTTGCAGCACCTG
ACCGCCCTGACCTACAGTCAGCACGATAATTGTTCCGACAGCGATTCGAT
TGTTTTGGAGCCGGGCTGCGAGATCACCAACAAACGCTGCCAGTGCTGGC
CAACTATGCGCACCTGTCTCAGCGAACTGACCAGCGATGGGGGATCCCCC
GACGACTCTCGCTGGCACTTCAAGAACCTAGAGGACTGCCAGTTGAATCT
ACAAAATCTAATAAAACTCGAACAGGAATTCGATGAAGACTACAAAATCT
CACCGAGCAAATTCACATACAAAAAACTACGCAGAAAGCGAAAATCTTTA
AAGAAACGAATCATCATCTTGAAGGATGCAAGCTTTCTAGACCAT
FMO11592.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cmpy-RD | 1638 | CG13253-RD | 373..1191 | 9..827 | 4095 | 100 | Plus |
| cmpy-RC | 1622 | CG13253-RC | 357..1175 | 9..827 | 4095 | 100 | Plus |
| cmpy-RB | 2737 | CG13253-RB | 1815..2290 | 352..827 | 2365 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20716799..20717145 | 355..9 | 1735 | 100 | Minus |
| 3L | 28110227 | 3L | 20713680..20713878 | 684..486 | 995 | 100 | Minus |
| 3L | 28110227 | 3L | 20715553..20715687 | 486..352 | 660 | 99.3 | Minus |
| 3L | 28110227 | 3L | 20713484..20713613 | 811..682 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:46:16 has no hits.
FMO11592.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-14 09:59:52 Download gff for
FMO11592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13253-RC | 355..1178 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:00 Download gff for
FMO11592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cmpy-RC | 357..1180 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:22 Download gff for
FMO11592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cmpy-RC | 357..1180 | 9..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:22 Download gff for
FMO11592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20713484..20713611 | 684..811 | 100 | <- | Minus |
| 3L | 20713681..20713877 | 487..683 | 100 | <- | Minus |
| 3L | 20715553..20715683 | 356..486 | 100 | <- | Minus |
| 3L | 20716799..20717145 | 9..355 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:00 Download gff for
FMO11592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20706584..20706711 | 684..811 | 100 | <- | Minus |
| arm_3L | 20706781..20706977 | 487..683 | 100 | <- | Minus |
| arm_3L | 20708653..20708783 | 356..486 | 100 | <- | Minus |
| arm_3L | 20709899..20710245 | 9..355 | 100 | | Minus |
