Clone FMO11601 Report

Search the DGRC for FMO11601

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:1
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG18586-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11601.5prime Sequence

969 bp (968 high quality bases) assembled on 2012-05-29

> FMO11601.5prime
CAGTCGACATGGCTGAAATGGAAGTAAAACAAAAACTATTGAACGCGATG
TGCACTTATGATGATAAACTCAAGATCTGGAGTGGTCGTGAAGCACCAAG
TTTATTTTCGCCAAACTTATCAATCGGAGAGATAATCTTTGGGGATATGG
TAAACAATCCGAAACTCATTGCCCAGATCTCGATCACGGAGGACATCGTA
CTCACCCGCGAAGATCTTCATATGAATGCGATGCGAGTGGCTAGTTATAT
GAGGAATATGGGCTTGGGGCAAACTGATATAGTGGGGGTCATGGGCAGAC
ACACGACTCACCAATCAGCTGTGGCATATGCATGCTTCTTCAACGGAACC
CCCTTACACGCCCTTCACAATGCCTACGAAGAGGCATGCATCGCCAAACT
TTTTGGAATCACAAAGCCCCGCTTGATCTTCTGCGATGGTGATGAGTATG
AAAAGGTTAAATCGGCCACCAAGGACCTCCAGGTAACGATAGTCACCATG
CGGAATCATCCGAGGGGATCAGTGAGGATCCAGGATGTTCTGACCACTCC
AGTGATGCAGAATTTCCAACCACTTCGTCTCAAAGATGGCATCGATCACA
CTCTGGCCATTCTCAGTTCTTCCGGCACCTCGGGATTTCCAAAGGCAGTT
ACCATCAGCAATAGTCACAAGATCATTGTGGACTACATGGCAATTAATAA
CTCCAATATTCAGTATACGTCGAGCACCCTGGACTGGTGCTCGGGTCTTT
CGATGGCCATAACCTCTGGCGTGTTCAGTACCACTAGTATTATAGCGGAC
TGTGACTTTGATCCTGGGCTATTTTGTCGCGCCATTGGAAAGTATAGGAT
CTCGATGGTGCTTCTAAGTAGCTCCTACCTAGCCATATTTGCCAACTGCC
CAAAGTCCGAATCGGCTGACCTGCCTTCATTAAATACGTGAATTTTTGGA
AGATCAAGCTGTTCTCTGG

FMO11601.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG18586-RB 1817 CG18586-RB 102..1062 9..969 4700 99.4 Plus
CG18586-RC 2020 CG18586-RC 463..1256 176..969 3865 99.2 Plus
CG18586-RC 2020 CG18586-RC 323..463 9..149 705 100 Plus
CG5568-RA 1911 CG5568-RA 148..767 59..678 505 72.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5873854..5874370 173..689 2585 100 Plus
3L 28110227 3L 5874422..5874702 689..969 1255 96.4 Plus
3L 28110227 3L 5873633..5873800 9..176 840 100 Plus
3L 28110227 3L 5871882..5872323 237..678 470 73.8 Plus
Blast to na_te.dros performed on 2014-11-28 02:56:59 has no hits.

FMO11601.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:48 Download gff for FMO11601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18586-RB 102..1062 9..969 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:25 Download gff for FMO11601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18586-RB 102..1062 9..969 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:28 Download gff for FMO11601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18586-RB 102..1062 9..969 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:28 Download gff for FMO11601.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5873633..5873800 9..176 100 -> Plus
3L 5873858..5874369 177..688 100 -> Plus
3L 5874422..5874702 689..969 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:25 Download gff for FMO11601.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5866733..5866900 9..176 100 -> Plus
arm_3L 5866958..5867469 177..688 100 -> Plus
arm_3L 5867522..5867802 689..969 97   Plus