FMO11601.5prime Sequence
969 bp (968 high quality bases) assembled on 2012-05-29
> FMO11601.5prime
CAGTCGACATGGCTGAAATGGAAGTAAAACAAAAACTATTGAACGCGATG
TGCACTTATGATGATAAACTCAAGATCTGGAGTGGTCGTGAAGCACCAAG
TTTATTTTCGCCAAACTTATCAATCGGAGAGATAATCTTTGGGGATATGG
TAAACAATCCGAAACTCATTGCCCAGATCTCGATCACGGAGGACATCGTA
CTCACCCGCGAAGATCTTCATATGAATGCGATGCGAGTGGCTAGTTATAT
GAGGAATATGGGCTTGGGGCAAACTGATATAGTGGGGGTCATGGGCAGAC
ACACGACTCACCAATCAGCTGTGGCATATGCATGCTTCTTCAACGGAACC
CCCTTACACGCCCTTCACAATGCCTACGAAGAGGCATGCATCGCCAAACT
TTTTGGAATCACAAAGCCCCGCTTGATCTTCTGCGATGGTGATGAGTATG
AAAAGGTTAAATCGGCCACCAAGGACCTCCAGGTAACGATAGTCACCATG
CGGAATCATCCGAGGGGATCAGTGAGGATCCAGGATGTTCTGACCACTCC
AGTGATGCAGAATTTCCAACCACTTCGTCTCAAAGATGGCATCGATCACA
CTCTGGCCATTCTCAGTTCTTCCGGCACCTCGGGATTTCCAAAGGCAGTT
ACCATCAGCAATAGTCACAAGATCATTGTGGACTACATGGCAATTAATAA
CTCCAATATTCAGTATACGTCGAGCACCCTGGACTGGTGCTCGGGTCTTT
CGATGGCCATAACCTCTGGCGTGTTCAGTACCACTAGTATTATAGCGGAC
TGTGACTTTGATCCTGGGCTATTTTGTCGCGCCATTGGAAAGTATAGGAT
CTCGATGGTGCTTCTAAGTAGCTCCTACCTAGCCATATTTGCCAACTGCC
CAAAGTCCGAATCGGCTGACCTGCCTTCATTAAATACGTGAATTTTTGGA
AGATCAAGCTGTTCTCTGG
FMO11601.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18586-RB | 1817 | CG18586-RB | 102..1062 | 9..969 | 4700 | 99.4 | Plus |
CG18586-RC | 2020 | CG18586-RC | 463..1256 | 176..969 | 3865 | 99.2 | Plus |
CG18586-RC | 2020 | CG18586-RC | 323..463 | 9..149 | 705 | 100 | Plus |
CG5568-RA | 1911 | CG5568-RA | 148..767 | 59..678 | 505 | 72.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5873854..5874370 | 173..689 | 2585 | 100 | Plus |
3L | 28110227 | 3L | 5874422..5874702 | 689..969 | 1255 | 96.4 | Plus |
3L | 28110227 | 3L | 5873633..5873800 | 9..176 | 840 | 100 | Plus |
3L | 28110227 | 3L | 5871882..5872323 | 237..678 | 470 | 73.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:56:59 has no hits.
FMO11601.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:48 Download gff for
FMO11601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18586-RB | 102..1062 | 9..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:25 Download gff for
FMO11601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18586-RB | 102..1062 | 9..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:28 Download gff for
FMO11601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18586-RB | 102..1062 | 9..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:28 Download gff for
FMO11601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5873633..5873800 | 9..176 | 100 | -> | Plus |
3L | 5873858..5874369 | 177..688 | 100 | -> | Plus |
3L | 5874422..5874702 | 689..969 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:25 Download gff for
FMO11601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5866733..5866900 | 9..176 | 100 | -> | Plus |
arm_3L | 5866958..5867469 | 177..688 | 100 | -> | Plus |
arm_3L | 5867522..5867802 | 689..969 | 97 | | Plus |