FMO11602.5prime Sequence
863 bp (863 high quality bases) assembled on 2012-05-29
> FMO11602.5prime
CAGTCGACATGCATTATCAAAACAATAATAATAATAATAATAATGTCATT
AATCTGAGATCCCCTGCAATTCCACACAGAATTTCCCCGGAATCCGTAGC
AACTACAAATTCTTCAAACATGGGCCTGAACATACCCATGTTGATAGCGA
GCAGCCAGACGCTGGACAGTTGGAATACGGCGGGTCAGTACTCGCCACCG
ATATCGGGATCCGGCGGCGGTGGATCCGAGCGAGGAGGAAGTGCTGGAGG
CGGCGGAGTGCCGCCACAGCAACTGCGAGTACCGCTGCCGATGAGCTATC
ATGGCGGAGCTGGTGGTGGAAGCAGCAGTAGTGATTTCCAGCAGAGTCCC
CTGAAGACCATGGACACCTCGGACAATGAGGATAATAACAATACCAAGGA
GGATGTGGCGGCGGCAGCGGCACTGGGACAACTGGCTGCCAAGGTCTAGC
TGCGATCGCCGGCGGGCGCAGGTCCTGGCGGTGGCGGTGGTTCGAGCAGT
AGGGAAGCCAATGATCCAACCAGCGATCCCATCAAGCCCGACCGCACTCT
AAGCGAAGCTGGCAGCAGTCCCATACCGAATACCAATATGCACGAGGCGC
ACAAGAATCACCTGCTAAACAGTCCCGCCGGCGGAAGGTCAGTCACGCCG
CGGCAGGCGCATGAGCAGCTGCATCACCATCCGCACACGCAACACCACCT
GCAACAGCAGCAGCAACACTGCAGCAGCAGCATCAGCAGTTGCAGCAGCA
ACAACTGCACAGCATCAGCAACAGCAGCAGCTGCATCACGGCCACGAGGA
ATTGGACATCAAGCAGAGTTGGTGGACTATTTCCATGTTCAGCGGCTGGC
GGTGGTGTTGGTC
FMO11602.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-RC | 2535 | CG5953-RC | 94..955 | 5..862 | 4150 | 99.1 | Plus |
| CG5953-RD | 4576 | CG5953-RD | 1208..1954 | 120..862 | 3590 | 99.1 | Plus |
| CG5953-RB | 3796 | CG5953-RB | 1470..2216 | 120..862 | 3590 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16510700..16511446 | 862..120 | 3490 | 99.1 | Minus |
| 2L | 23513712 | 2L | 16519970..16520084 | 119..5 | 560 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:57:02 has no hits.
FMO11602.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:49 Download gff for
FMO11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RC | 90..955 | 1..863 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:27 Download gff for
FMO11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RC | 90..955 | 1..863 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:30 Download gff for
FMO11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RC | 90..955 | 1..863 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:30 Download gff for
FMO11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16510699..16511446 | 120..863 | 98 | <- | Minus |
| 2L | 16519970..16520087 | 1..119 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:27 Download gff for
FMO11602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16519970..16520087 | 1..119 | 97 | | Minus |
| arm_2L | 16510699..16511446 | 120..863 | 98 | <- | Minus |
