FMO11603.5prime Sequence
850 bp (850 high quality bases) assembled on 2012-05-29
> FMO11603.5prime
CAGTCGACATGCCACCCAGACCTCCGCCAAAGAATATTCGGCGAGTTGAG
CCCCCTACCATTCCCAGCCAGCAGCTATCGTCTTCGCCCAAAAGGGAGAC
ATATATGATCAACACGATGCCAAGCAGTTCAAGCGGCAGTCTCTGCATTG
ACAGCCTGGGCAATTCGCTGGAGCGGAACATCAAGCCGTCTGATATACTA
CGTCAGAAATCATCTGATAATTTGGATTCCAAGTACTCGGCAAAACGGAA
AACCACACCGGAGCTTAGTAAATTTGTGAACGTAAACAATCCTGAATTAA
TGGAGGAGCTCGGTCGTAAGATGGTAAGCAAGGCAGACAGCCTGGAACAA
ACGAGGAGGAACGACTCGTCGCCTTCTGGCTGTGGTAGCCTAGGACGCAC
TTCCTCCACGCCTGGGCGATCGTTGACTCCTGGACGAACCGGAGTTGGTG
CCTCGCCAACTGGTAGTCTAAGTAAAACCGGAAAACTGGCAATGGCGGAC
AGCAGCTCCACTAGCAGTCTAGAGAGGAGATCGTGCCTGCAGGCTGTCGA
TGCGGACATTGGAACGGAATCGCGGGAATCGGGTGCCAACCAGCGTAGTG
TAGGGTCCAAGGAGTCGCTGACATCACAAGGCATATCGGAGGTGATCAAG
AGCTACGAAAGCGTTTCTTCGCTAAGTTCGGAAAGTGCAAAGGCGGTGGC
TTCCCAACAGTCGGCGGCAGCGGGCGGAGCTTTAGCGGAGTGTGAACCGT
ACTATGATAGCGTACCGCTCGACAACGGCGACGGAGAATACGTTTTTATT
AAGCCCGGCCGCACCGGATCCTCATCCAGTCGCGATGATTTGTCGACGGC
FMO11603.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP1A-RC | 4254 | CG40494-RC | 1431..2270 | 9..848 | 4185 | 99.9 | Plus |
| RhoGAP1A-RB | 5012 | CG00000-RB | 1208..2047 | 9..848 | 4185 | 99.9 | Plus |
| RhoGAP1A-RA | 5082 | CG00000-RA | 1208..2047 | 9..848 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 133500..134127 | 17..644 | 3140 | 100 | Plus |
| X | 23542271 | X | 134268..134472 | 644..848 | 1010 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:57:06 has no hits.
FMO11603.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:49 Download gff for
FMO11603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RC | 1423..2271 | 2..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:30 Download gff for
FMO11603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RA | 1200..2048 | 2..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:31 Download gff for
FMO11603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP1A-RA | 1200..2048 | 2..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:31 Download gff for
FMO11603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 133500..134127 | 17..644 | 100 | -> | Plus |
| X | 134269..134473 | 645..850 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:30 Download gff for
FMO11603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 29887..30514 | 17..644 | 100 | -> | Plus |
| arm_X | 30656..30860 | 645..850 | 99 | | Plus |
