FMO11605.5prime Sequence
762 bp (761 high quality bases) assembled on 2012-05-29
> FMO11605.5prime
CAGTCGACATGGCCGAAGCCCATGCCGCCGTGGCATTCTCGTTTGCCATC
ACCCATGAGGGCTTCGACATCAACTATGACCACGAGGTGCTCAATTTGGT
GTGGAACTCAGGAGTTCGTTCCTGGAAAAAGCGATTGGCTCGCGCAAGGA
ACGGCGTACGCAATGGCGTCTATCCGGCTCACATCCAGAGCCTCTGGTTG
ATCTCAGCAATAGCGCTGGGTCTACACTTTGCGGGCTACCAGGCTCCATT
CAATCTGACCAACCGTATACTGGTGCACCTGCCTTCCAACACGATAAACT
GGCAGGTTACCGCCTGCTTTTTGGCCGCTCTGGTGGTCTGGCTATCGATC
TGTTTCACCATGAGATACACTCTCAAGCTGCTGCTCATGTACAAGGGCTG
GATGTACGAGTCCAGAGCTCCCGGTAGTCGTGTCTCTCTGCCCACCATGT
TGTGGGTGGCAGTGGTGCGGGTTCTATCTAGTTGGAACAAACCGGGTCTG
TACAGCTTCCAGGGTTCTCTGCCCAGGCTGCCACTGCCCTCCGTTAAAGA
CACGATGACCAGGTACTTGCGCAGTGTTCGACCGCTGCTTTGATGATGAG
AACTACACGCGCATGGAGCGCCTGGCCAAAGAATTCGAACAGACCATCGG
CAAGAAGCTGCAGTGGTACCTCATCCTCAAGAGCTGGTGGTCCACCACTA
CGTGTCGGATTGGTGGGAGGAGTACTTCTACCTCCGTGGTCTCACTTCCC
CTCTGCGTGAAA
FMO11605.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
whd-RC | 2888 | CG12891-RC | 250..1001 | 9..761 | 3635 | 99.1 | Plus |
whd-RA | 2882 | CG12891-RA | 250..1001 | 9..761 | 3635 | 99.1 | Plus |
whd-RD | 2907 | CG12891-RD | 269..1020 | 9..761 | 3635 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10472602..10473213 | 761..149 | 2860 | 98.9 | Minus |
2R | 25286936 | 2R | 10473269..10473409 | 149..9 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:57:13 has no hits.
FMO11605.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:50 Download gff for
FMO11605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
whd-RA | 246..1000 | 1..759 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:34 Download gff for
FMO11605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
whd-RD | 264..1018 | 1..759 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:35 Download gff for
FMO11605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
whd-RD | 264..1018 | 1..759 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:35 Download gff for
FMO11605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10472604..10473212 | 150..759 | 98 | <- | Minus |
2R | 10473269..10473414 | 1..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:34 Download gff for
FMO11605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6360109..6360717 | 150..759 | 98 | <- | Minus |
arm_2R | 6360774..6360919 | 1..149 | 97 | | Minus |