Clone FMO11605 Report

Search the DGRC for FMO11605

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:5
Vector:pMK33-CFH-BD
Associated Gene/Transcriptwhd-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11605.5prime Sequence

762 bp (761 high quality bases) assembled on 2012-05-29

> FMO11605.5prime
CAGTCGACATGGCCGAAGCCCATGCCGCCGTGGCATTCTCGTTTGCCATC
ACCCATGAGGGCTTCGACATCAACTATGACCACGAGGTGCTCAATTTGGT
GTGGAACTCAGGAGTTCGTTCCTGGAAAAAGCGATTGGCTCGCGCAAGGA
ACGGCGTACGCAATGGCGTCTATCCGGCTCACATCCAGAGCCTCTGGTTG
ATCTCAGCAATAGCGCTGGGTCTACACTTTGCGGGCTACCAGGCTCCATT
CAATCTGACCAACCGTATACTGGTGCACCTGCCTTCCAACACGATAAACT
GGCAGGTTACCGCCTGCTTTTTGGCCGCTCTGGTGGTCTGGCTATCGATC
TGTTTCACCATGAGATACACTCTCAAGCTGCTGCTCATGTACAAGGGCTG
GATGTACGAGTCCAGAGCTCCCGGTAGTCGTGTCTCTCTGCCCACCATGT
TGTGGGTGGCAGTGGTGCGGGTTCTATCTAGTTGGAACAAACCGGGTCTG
TACAGCTTCCAGGGTTCTCTGCCCAGGCTGCCACTGCCCTCCGTTAAAGA
CACGATGACCAGGTACTTGCGCAGTGTTCGACCGCTGCTTTGATGATGAG
AACTACACGCGCATGGAGCGCCTGGCCAAAGAATTCGAACAGACCATCGG
CAAGAAGCTGCAGTGGTACCTCATCCTCAAGAGCTGGTGGTCCACCACTA
CGTGTCGGATTGGTGGGAGGAGTACTTCTACCTCCGTGGTCTCACTTCCC
CTCTGCGTGAAA

FMO11605.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
whd-RC 2888 CG12891-RC 250..1001 9..761 3635 99.1 Plus
whd-RA 2882 CG12891-RA 250..1001 9..761 3635 99.1 Plus
whd-RD 2907 CG12891-RD 269..1020 9..761 3635 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10472602..10473213 761..149 2860 98.9 Minus
2R 25286936 2R 10473269..10473409 149..9 705 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:57:13 has no hits.

FMO11605.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:50 Download gff for FMO11605.5prime
Subject Subject Range Query Range Percent Splice Strand
whd-RA 246..1000 1..759 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:34 Download gff for FMO11605.5prime
Subject Subject Range Query Range Percent Splice Strand
whd-RD 264..1018 1..759 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:35 Download gff for FMO11605.5prime
Subject Subject Range Query Range Percent Splice Strand
whd-RD 264..1018 1..759 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:35 Download gff for FMO11605.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10472604..10473212 150..759 98 <- Minus
2R 10473269..10473414 1..149 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:34 Download gff for FMO11605.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6360109..6360717 150..759 98 <- Minus
arm_2R 6360774..6360919 1..149 97   Minus