FMO11607.5prime Sequence
1071 bp (1004 high quality bases) assembled on 2012-05-29
> FMO11607.5prime
CAGTCGACATGCCCAGCCAAATGAGCTTATCGGAAGGTCTCCAGGCACCA
ATTGCTGGAGTGCAGCCTCATCTGCAGCCATGGGAGGCACATGCGTGGTC
CCCGGATCGTCTGGGCTCTATGTACTCCGACTGGGCCATGTTCTTTTTCA
CCCAACAGCGGTACGCAAACGGACTTAGGTATTTCAACAGCGCTCTGGAT
CTGAATCCGTTCAATGAAAGAGCTCTGATGCGGCGTAGTCAGCTGAAAAG
ATCGATGGGCCTAGCCTCCGAGGCTCTGAAGGATTGCTCCCGAGCAGAGG
ATCTGTTGATGAGCCGAAAGCCACCAGTAACCAATCCCAATGTCAGTCTG
GAAGTCTGCGATGCTCTGTACGAGTCCAATCGCTTGGAAGATTCCAAAAT
AAATCTGCATTGTCATTTAAAGCGATTTAGCTCCGGCCAAAGAGGTCCTG
TTCTCGACCGTCTCAATGTGTTAAATGAGAACTTTCATGACACATTATCA
GATGATACCACCATGTCTGTGCAGCGCCTGATCAATCGCATGATGGCTAG
TTTGGCTAAGGAGCCCAAGGATATTAAGGATACTTGCGACGTGGTTAGCA
TAATGGAAAACGAGGAAACCCATTTGTCCCCACTGGAAATGGCTAGGCGA
AAAAGGCATTTTAAGATATACAACCAGACGTATCTGAACAAATGCTGGGT
GGATGTGGCCTTTCTGAAGACACTGCGAGATGATCCTAATGTGCTGCCCA
AGCATTGCAAAAAGTCATCCGAGTATTTGGGCAAACTGATGGCTAGCAAT
TATAAAGCGGAACGCACTCTTACGAAAACGCTGCATACCCGAAGTCCCAT
GTACGCCTTTACATCAACAGAAATATCCCAACGAGGCATTTTATAATAAG
CACCGGGAGGAAAACTATATCGCATTCAGTACCAGACGAGGCGGATAATG
TTCAAGATTCTGCGCAGCATCCGATTGCTAATCGAGTGGAAAACTCAATT
AACCTACACCATTTACTGAGAAGTCTGGCGACTATGTCACCTTCAGACGA
TTGCGTATGGCCTGGAAGTTG
FMO11607.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wa-cup-RB | 1878 | CG10113-RB | 91..1138 | 9..1050 | 4880 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7420855..7421146 | 9..300 | 1460 | 100 | Plus |
| 3R | 32079331 | 3R | 7421633..7421844 | 613..824 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 7421200..7421374 | 300..474 | 860 | 99.4 | Plus |
| 3R | 32079331 | 3R | 7421432..7421581 | 470..619 | 735 | 99.3 | Plus |
| 3R | 32079331 | 3R | 7421917..7422075 | 824..982 | 655 | 96.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:57:21 has no hits.
FMO11607.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:52 Download gff for
FMO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wa-cup-RB | 84..1146 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:39 Download gff for
FMO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wa-cup-RB | 84..1146 | 1..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:39 Download gff for
FMO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wa-cup-RB | 84..1146 | 1..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:39 Download gff for
FMO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7421433..7421576 | 471..614 | 100 | -> | Plus |
| 3R | 7421635..7421844 | 615..824 | 100 | -> | Plus |
| 3R | 7421918..7422094 | 825..999 | 95 | -> | Plus |
| 3R | 7420848..7421146 | 1..300 | 98 | -> | Plus |
| 3R | 7421201..7421370 | 301..470 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:39 Download gff for
FMO11607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3246570..3246868 | 1..300 | 98 | -> | Plus |
| arm_3R | 3246923..3247092 | 301..470 | 100 | -> | Plus |
| arm_3R | 3247155..3247298 | 471..614 | 100 | -> | Plus |
| arm_3R | 3247357..3247566 | 615..824 | 100 | -> | Plus |
| arm_3R | 3247640..3247816 | 825..999 | 95 | -> | Plus |
