FMO11608.5prime Sequence
543 bp (542 high quality bases) assembled on 2012-05-29
> FMO11608.5prime
GCCACCTTAAATCGACCCTCTATTTTCAACTGTACATTCAACGAATCATG
AATGCCGCACAAACAAAATACAAAATTAACGAGCTAGATATTCGCCCACA
TGGACAATCTCGTGAACTGCCAGTGCTTCCCCGTTCGGAAAGCACTTCTG
AGTTTATGCCCTTGGAAGAGAAGGAAGTTGAGTACTTTTTCGCATCGGAC
GCCTCAGCCGTCATAGAGCACACTAACCGGGTCATCTATTTGGAGGACGA
CGATGTTGCTGCTGTTCGGGATGGAACTTTGAGTATACATCGCCTAAAGA
AGAGCCTGGATGTTCCGCACGCTCGCGAAATCACTACCCTAAAAATGGAA
ATTCAACAGATCATGAAGGGAAACTATGACTATTTTATGCAAAAGGAGAT
TTTCGAGCAGCCCGACTCCGTGGTGAACACAATGCGCGGTCGCGTCCGCT
TCGATGGTAACGCCATAGTGCTCGGCGGGATCAAAGACTACATTCCTGAA
ATCAAACGCTGTCGACGCCTGATGTTGATTGGATGTGGCACAT
FMO11608.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat1-RK | 3726 | CG12449-RK | 2079..2621 | 1..543 | 2700 | 99.8 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 1039..1496 | 86..543 | 2275 | 99.8 | Plus |
| Gfat1-RA | 2426 | CG12449-RA | 864..1321 | 86..543 | 2275 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4136419..4136718 | 244..543 | 1485 | 99.7 | Plus |
| 3R | 32079331 | 3R | 4135137..4135382 | 1..246 | 1230 | 100 | Plus |
| 3R | 32079331 | 3R | 28338412..28338787 | 543..171 | 465 | 75.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:57:25 has no hits.
FMO11608.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:53 Download gff for
FMO11608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat1-RK | 2082..2624 | 1..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:41 Download gff for
FMO11608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat1-RK | 2079..2621 | 1..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:41 Download gff for
FMO11608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat1-RK | 2079..2621 | 1..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:41 Download gff for
FMO11608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4135137..4135381 | 1..245 | 100 | -> | Plus |
| 3R | 4136421..4136718 | 246..543 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:41 Download gff for
FMO11608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3RHet | 2478903..2479147 | 1..245 | 100 | -> | Plus |
| 3RHet | 2480187..2480484 | 246..543 | 99 | | Plus |
