FMO11609.5prime Sequence
1003 bp (970 high quality bases) assembled on 2012-05-29
> FMO11609.5prime
CAGTCGACATGGAACCAGATCCCAATGGGATAAAAATAGAGCCCTCACTT
GATCAGCAGCAGTACGCCACCCATGTGCTGGCCATCAATGGCTCCAATGC
CCGCCTGCTCATCGAGCATCCCTCAGCTTTGTTGGTACCACTCTCCTCGC
ATCACCAGCTGCAATTGCAACAGCAGCAACAACAGCAGCAGCACGTACAG
CAGCAACATCAACAACAGCAGCAGCAGCATCAGCAACAACAGCAACAGTT
CCAGCAGCAACATCTTCACCAGCAGCAACAGGATCAACTGCAGTTCCAGC
AACAGCATCTCCAGCTTTATGCACCACTGAAGCAACAGCAATTGCAGCAG
CAGCAATCGCAGCAGCCACCCACTCCATTGGGACCCACCAGCAGTGCCAG
TTCCGCATCCATAACAGGTGCCTCCACCACTGGCCACCAGCAGAGGTGGA
ACGAGAGCCCCGAGGCACGCCAGCGCCGTCTGGCCAGAAATGCTGAAAGG
ATGCGGGAACGCCGGCAGCGCGAGAGCGAGGAGGAGTATCGCAAGCGACT
ACTCCGGAATGCAGAAGCCAATCGCCAGAGACGCCAGAATGAATCCGACA
TAGAGCGGGCCATGCGGCTAGTGAGGAATGCGGCCAGGCAACGGCTACGC
CGGGCCATGGAGTCGCCGGACCAGAGGGCCAAACGGCTGGCCAAATTGGC
CGAAAGGATGCGCATGTATCGCGCCAGCGAGACGAACGATCAGCGAAAGC
TCCGGCTGGCAGAATGGCGGCAAGGGCGCGCCAAAGGATCGCCAATGAGT
CACCGGAGGAGCGGAAGGAAAGACTGAGAAAGCTGAACGATTATGCCAAA
AAGGCGACCACCACAGCGACGATCGACGACAACGGACGAGGCATGCACCC
CGCAGCCCGCGGAGGATCAGCAGCATCTGGTGACAGCAGCCGCCTACCAG
CAACACCAGTCCCTGGCCGGATTGAGTTATTTGGGTACATGGCATGTTTC
TGG
FMO11609.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14442-RB | 4388 | CG14442-RB | 1046..2039 | 9..1003 | 4770 | 98.9 | Plus |
CG14442-RE | 4412 | CG14442-RE | 1052..2063 | 9..1003 | 4580 | 97.1 | Plus |
CG14442-RD | 2983 | CG14442-RD | 1052..1898 | 9..854 | 4210 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6693110..6693956 | 854..9 | 4185 | 99.9 | Minus |
X | 23542271 | X | 6692717..6692866 | 1003..852 | 525 | 92.8 | Minus |
3L | 28110227 | 3L | 14027696..14027803 | 280..173 | 210 | 79.6 | Minus |
Blast to na_te.dros performed 2014-11-28 02:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..7194 | 149..600 | 454 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6887 | 202..369 | 363 | 68.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2679 | 151..390 | 344 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6898 | 226..417 | 336 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2260..2534 | 172..443 | 286 | 60.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6938 | 243..474 | 273 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2525 | 252..463 | 268 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2619..2835 | 153..369 | 247 | 62.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1181 | 217..343 | 238 | 67.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1055..1147 | 264..356 | 195 | 67.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2449 | 275..416 | 192 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1589 | 231..302 | 189 | 73.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6877 | 291..443 | 178 | 61.6 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3192..3342 | 172..339 | 144 | 60.4 | Plus |
FMO11609.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:53 Download gff for
FMO11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14442-RB | 1041..2039 | 1..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:44 Download gff for
FMO11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14442-RB | 1041..2039 | 1..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:43 Download gff for
FMO11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14442-RB | 1041..2039 | 1..1003 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:43 Download gff for
FMO11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6692717..6692864 | 854..1003 | 93 | <- | Minus |
X | 6693111..6693961 | 1..853 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:44 Download gff for
FMO11609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6586750..6586897 | 854..1003 | 93 | <- | Minus |
arm_X | 6587144..6587994 | 1..853 | 99 | | Minus |