Clone FMO11609 Report

Search the DGRC for FMO11609

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:9
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG14442-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11609.5prime Sequence

1003 bp (970 high quality bases) assembled on 2012-05-29

> FMO11609.5prime
CAGTCGACATGGAACCAGATCCCAATGGGATAAAAATAGAGCCCTCACTT
GATCAGCAGCAGTACGCCACCCATGTGCTGGCCATCAATGGCTCCAATGC
CCGCCTGCTCATCGAGCATCCCTCAGCTTTGTTGGTACCACTCTCCTCGC
ATCACCAGCTGCAATTGCAACAGCAGCAACAACAGCAGCAGCACGTACAG
CAGCAACATCAACAACAGCAGCAGCAGCATCAGCAACAACAGCAACAGTT
CCAGCAGCAACATCTTCACCAGCAGCAACAGGATCAACTGCAGTTCCAGC
AACAGCATCTCCAGCTTTATGCACCACTGAAGCAACAGCAATTGCAGCAG
CAGCAATCGCAGCAGCCACCCACTCCATTGGGACCCACCAGCAGTGCCAG
TTCCGCATCCATAACAGGTGCCTCCACCACTGGCCACCAGCAGAGGTGGA
ACGAGAGCCCCGAGGCACGCCAGCGCCGTCTGGCCAGAAATGCTGAAAGG
ATGCGGGAACGCCGGCAGCGCGAGAGCGAGGAGGAGTATCGCAAGCGACT
ACTCCGGAATGCAGAAGCCAATCGCCAGAGACGCCAGAATGAATCCGACA
TAGAGCGGGCCATGCGGCTAGTGAGGAATGCGGCCAGGCAACGGCTACGC
CGGGCCATGGAGTCGCCGGACCAGAGGGCCAAACGGCTGGCCAAATTGGC
CGAAAGGATGCGCATGTATCGCGCCAGCGAGACGAACGATCAGCGAAAGC
TCCGGCTGGCAGAATGGCGGCAAGGGCGCGCCAAAGGATCGCCAATGAGT
CACCGGAGGAGCGGAAGGAAAGACTGAGAAAGCTGAACGATTATGCCAAA
AAGGCGACCACCACAGCGACGATCGACGACAACGGACGAGGCATGCACCC
CGCAGCCCGCGGAGGATCAGCAGCATCTGGTGACAGCAGCCGCCTACCAG
CAACACCAGTCCCTGGCCGGATTGAGTTATTTGGGTACATGGCATGTTTC
TGG

FMO11609.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14442-RB 4388 CG14442-RB 1046..2039 9..1003 4770 98.9 Plus
CG14442-RE 4412 CG14442-RE 1052..2063 9..1003 4580 97.1 Plus
CG14442-RD 2983 CG14442-RD 1052..1898 9..854 4210 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6693110..6693956 854..9 4185 99.9 Minus
X 23542271 X 6692717..6692866 1003..852 525 92.8 Minus
3L 28110227 3L 14027696..14027803 280..173 210 79.6 Minus
Blast to na_te.dros performed 2014-11-28 02:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..7194 149..600 454 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6887 202..369 363 68.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2434..2679 151..390 344 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6898 226..417 336 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2260..2534 172..443 286 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6938 243..474 273 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2525 252..463 268 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2619..2835 153..369 247 62.1 Plus
roo 9092 roo DM_ROO 9092bp 1059..1181 217..343 238 67.7 Plus
roo 9092 roo DM_ROO 9092bp 1055..1147 264..356 195 67.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2449 275..416 192 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1589 231..302 189 73.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6877 291..443 178 61.6 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3192..3342 172..339 144 60.4 Plus

FMO11609.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:53 Download gff for FMO11609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14442-RB 1041..2039 1..1003 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:44 Download gff for FMO11609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14442-RB 1041..2039 1..1003 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:43 Download gff for FMO11609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14442-RB 1041..2039 1..1003 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:43 Download gff for FMO11609.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6692717..6692864 854..1003 93 <- Minus
X 6693111..6693961 1..853 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:44 Download gff for FMO11609.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6586750..6586897 854..1003 93 <- Minus
arm_X 6587144..6587994 1..853 99   Minus