Clone FMO11612 Report

Search the DGRC for FMO11612

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:12
Vector:pMK33-CFH-BD
Associated Gene/TranscriptNKAIN-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11612.5prime Sequence

468 bp (358 high quality bases) assembled on 2012-05-29

> FMO11612.5prime
CAGTCGACATGGGCTCGTGCTCGTGTACGCGGCGACACTTTTTGCTGTCA
ATATGCTTCCTGCAAGTGATAACGATTATCGAGCGCCAGGTATTCGACTT
CCTCGGCTACATGTGGGCGCCTATCCTAGTGAACTTTTTCCACATTTTGT
TCATCATATTCGGGTTTTACGGCGCCTACCACTTTCGCGTTAAATACATC
ATCACCTATCTAATATGGAACTTCCTGTGGATCGGGTGGAATACCTTCCT
CATTTGCTTCTACTTAAATGTGGGGCAGTTGAACAGGGACAGTGACCTGC
TCAACCTGGGCACTGGCAGCGTCTCCTGGTTCGAGGCGAATGGGTACGGT
TGCAAGCCCCACTATAACATGGTTCTCGGGACGATACGTTCCGTCCCCCA
CGGCCGGAACCGCGTGGAAAGCTGCCTGCTGGAATACCCCTGGTGGAAAT
CACCCACTCGGGGGTACA

FMO11612.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
NKAIN-RL 2366 CG34413-RL 387..844 9..468 2055 97 Plus
NKAIN-RJ 2311 CG34413-RJ 387..844 9..468 2055 97 Plus
NKAIN-RI 1571 CG34413-RI 387..844 9..468 2055 97 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24883076..24883214 68..206 695 100 Plus
2R 25286936 2R 24883420..24883599 287..468 585 91.8 Plus
2R 25286936 2R 24883278..24883359 207..288 410 100 Plus
2R 25286936 2R 24882960..24883019 9..68 300 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:56:56 has no hits.

FMO11612.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:47 Download gff for FMO11612.5prime
Subject Subject Range Query Range Percent Splice Strand
NKAIN-RF 402..861 3..467 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:23 Download gff for FMO11612.5prime
Subject Subject Range Query Range Percent Splice Strand
NKAIN-RI 384..843 3..467 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:27 Download gff for FMO11612.5prime
Subject Subject Range Query Range Percent Splice Strand
NKAIN-RI 384..843 3..467 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:27 Download gff for FMO11612.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24882957..24883019 3..68 95 -> Plus
2R 24883077..24883214 69..206 100 -> Plus
2R 24883278..24883358 207..287 100 -> Plus
2R 24883421..24883598 288..467 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:23 Download gff for FMO11612.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20770480..20770542 3..68 95 -> Plus
arm_2R 20770600..20770737 69..206 100 -> Plus
arm_2R 20770801..20770881 207..287 100 -> Plus
arm_2R 20770944..20771121 288..467 92   Plus