FMO11612.5prime Sequence
468 bp (358 high quality bases) assembled on 2012-05-29
> FMO11612.5prime
CAGTCGACATGGGCTCGTGCTCGTGTACGCGGCGACACTTTTTGCTGTCA
ATATGCTTCCTGCAAGTGATAACGATTATCGAGCGCCAGGTATTCGACTT
CCTCGGCTACATGTGGGCGCCTATCCTAGTGAACTTTTTCCACATTTTGT
TCATCATATTCGGGTTTTACGGCGCCTACCACTTTCGCGTTAAATACATC
ATCACCTATCTAATATGGAACTTCCTGTGGATCGGGTGGAATACCTTCCT
CATTTGCTTCTACTTAAATGTGGGGCAGTTGAACAGGGACAGTGACCTGC
TCAACCTGGGCACTGGCAGCGTCTCCTGGTTCGAGGCGAATGGGTACGGT
TGCAAGCCCCACTATAACATGGTTCTCGGGACGATACGTTCCGTCCCCCA
CGGCCGGAACCGCGTGGAAAGCTGCCTGCTGGAATACCCCTGGTGGAAAT
CACCCACTCGGGGGTACA
FMO11612.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NKAIN-RL | 2366 | CG34413-RL | 387..844 | 9..468 | 2055 | 97 | Plus |
NKAIN-RJ | 2311 | CG34413-RJ | 387..844 | 9..468 | 2055 | 97 | Plus |
NKAIN-RI | 1571 | CG34413-RI | 387..844 | 9..468 | 2055 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24883076..24883214 | 68..206 | 695 | 100 | Plus |
2R | 25286936 | 2R | 24883420..24883599 | 287..468 | 585 | 91.8 | Plus |
2R | 25286936 | 2R | 24883278..24883359 | 207..288 | 410 | 100 | Plus |
2R | 25286936 | 2R | 24882960..24883019 | 9..68 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:56:56 has no hits.
FMO11612.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:47 Download gff for
FMO11612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NKAIN-RF | 402..861 | 3..467 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:23 Download gff for
FMO11612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NKAIN-RI | 384..843 | 3..467 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:27 Download gff for
FMO11612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NKAIN-RI | 384..843 | 3..467 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:27 Download gff for
FMO11612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24882957..24883019 | 3..68 | 95 | -> | Plus |
2R | 24883077..24883214 | 69..206 | 100 | -> | Plus |
2R | 24883278..24883358 | 207..287 | 100 | -> | Plus |
2R | 24883421..24883598 | 288..467 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:23 Download gff for
FMO11612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20770480..20770542 | 3..68 | 95 | -> | Plus |
arm_2R | 20770600..20770737 | 69..206 | 100 | -> | Plus |
arm_2R | 20770801..20770881 | 207..287 | 100 | -> | Plus |
arm_2R | 20770944..20771121 | 288..467 | 92 | | Plus |