FMO11614.5prime Sequence
1087 bp (925 high quality bases) assembled on 2012-05-21
> FMO11614.5prime
CCCCACCGAGATGTAACTTATCCGGTGCACGCCACTTCGCAAGCGACGGC
ACTATGCTGGCATCCGGAGAAGGCGCTCCTGGCCAGCGGTTGGGAGCACG
GCGACATCCATGTGTGGTTCGCTGGTCACAGGGAGTTTGCCAGCGTGAAC
GCACCGCACAAGGCGGCCATCGTCCTGCTGCAGTTCAGCGAGCAGGGCGG
GCGGATGGTCACGGCGGATGCCATGGGCTTGGTCACCGGATGGCGCTGCG
ATGGCCAGTACCAGTTCCTAACCATGTTCTCCCACGACCTGCGGGAGGTG
TTGCTGCTGATCTGCTTCCGCCTTACGGTGGAGAGTGAGGTGCGCGAGGA
GATGGCCAATCTAGCCAAGGCTGCTGTGGCAGGCGATGAGAACGCCCTGG
ACACCCTAACCAATTGGAGACCGCGCACAGCAGCCCGGAGCATGACCCAT
TCGGGGGTGCGGGACAACCACTGCTTCTACGCTTGCACCCAAGGAGGAGT
GGTGTACTACATCAACCAAGGAGGCGCCTGTGTCGAGGTGATGAAGTGCG
GATCACTGCCTCCCATTGTCCAGATGTTGTGGCACCCAAGAAAGGACGCC
GTCATTTGCCTGATGGAGGACTTGACAGTCACCTTGTTTTTGGTTGAATC
CACAGGCATCCTTACGGAGCTGGATCGTGTTAAATGAGCGGACGTGGAGG
CGGTCGGCAGGGAGGCATCGCGTGGTCTGGAAACTCTTTAGCCATCATAA
CAGGCGATTTTTTCGTCCGCATTTGGGACATCGAGAGAAGCGACAATTAC
CTATTGAAAATGGACCTACCCAGTGCCACCCAGCCAGGCTCATCTATGAC
CACTTTAAGTAATGGCACCATGTCCTCGTCCAACCAATTCTTTAGCCATG
ACAGCAGCGAAAGCACCGGCGTCTTCGCAGACACCAAGTACGGCCAGCTG
AACGGCGAAATGTTCACCTTGCTTGGCTAATAGCTCACGGTAACGACTCT
GTGGTGCAGAAACGTCCCAGGGTATGTCTATACTTGGAAGAAGGAACCGC
CAGCAAGCTAGTCGGTGCCACGAAATGTGCCTGGCAC
FMO11614.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rempA-RC | 5308 | CG11838-RC | 755..1842 | 1..1086 | 4910 | 97.3 | Plus |
| rempA-RB | 5024 | CG11838-RB | 471..1558 | 1..1086 | 4910 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 557942..558535 | 594..1 | 2955 | 99.8 | Minus |
| 2L | 23513712 | 2L | 557332..557668 | 1086..751 | 990 | 91.5 | Minus |
| 2L | 23513712 | 2L | 557721..557882 | 754..594 | 760 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:52:26 has no hits.
FMO11614.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-21 12:21:48 Download gff for
FMO11614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rempA-RC | 755..1842 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:33 Download gff for
FMO11614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rempA-RB | 471..1558 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:18 Download gff for
FMO11614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rempA-RB | 471..1558 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:18 Download gff for
FMO11614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 557332..557665 | 754..1086 | 91 | <- | Minus |
| 2L | 557722..557882 | 594..753 | 99 | <- | Minus |
| 2L | 557943..558535 | 1..593 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:33 Download gff for
FMO11614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 557332..557665 | 754..1086 | 91 | <- | Minus |
| arm_2L | 557722..557882 | 594..753 | 99 | <- | Minus |
| arm_2L | 557943..558535 | 1..593 | 99 | | Minus |
