FMO11617.5prime Sequence
758 bp (758 high quality bases) assembled on 2012-05-29
> FMO11617.5prime
CAGTCGACATGTTCGCGGGAATAAGGAAACGCCTGGCACGCAAGCAAAAC
GAGAAGGACTGCGATGAGGACGACAAGGAGGATGTGCTCGATAGTATGCC
ACCACCTCCGAATTACATACAGATCTCGCAGGGCAGGATTCAGTTGGTCC
ACCAGCCGAGAACGCCCGTTGAATCGGAGGCGGGAACTCTGTCCCTGGAG
CGGCACGGGGGCTCGATCTCCGGATCCGGCGGCTGTGATAAGAGCCAATG
CGGGTCGCCTACGTTCGAGAAGGAATTGCGCGAACAAATTGAGAACATGA
ATCGCATTATGAAATCCAAAGAAGGCAAGCAAATGCAGACATGTCGGGAT
CACAAGGCACTGCAGACGCGCTTTGCCCGACAGGAGAGCCTGCTCCAATC
GATGCAGCAGGAGAATCGATCCTTGCTCACACGAATCCGTCAGTATGAGC
ACTGCCTGGATGATGTGATGCGCAAGGTGGTGGACGCCATTGTGGCAGAA
GATAATCTCCGTGAGGAGGTGAGCATGCTGAAGGGCCGGGTTCGAGATCT
GGAGGCGCAAAATGCTGCTCTGTCCGCCAGTCCGGTGAAGGGCAGGGATG
AAGGCTACTGCACCATGAGCAGTGGGCAGCCGCAGCCGTCGAATGGGCAT
CTGGAAGATCTGCCCGAGGAACGGAACAGTGGCTCTTGCCTGCCGAACCC
TGCTCCACAGAAATGGAGGACTGGAGCATGTCGCAGGAGGAACTGGTATT
GATGACGT
FMO11617.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42663-RC | 3999 | CG42663-RC | 1133..1883 | 9..758 | 3685 | 99.5 | Plus |
| CG42663-RD | 4065 | CG42663-RD | 1436..1952 | 243..758 | 2515 | 99.2 | Plus |
| CG42663-RB | 4068 | CG42663-RB | 1436..1952 | 243..758 | 2515 | 99.2 | Plus |
| CG42663-RD | 4065 | CG42663-RD | 1133..1366 | 9..242 | 1170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12748908..12749306 | 361..758 | 1915 | 99.2 | Plus |
| 2R | 25286936 | 2R | 12734917..12735119 | 40..242 | 1000 | 99.5 | Plus |
| 2R | 25286936 | 2R | 12747678..12747747 | 296..365 | 335 | 98.6 | Plus |
| 2R | 25286936 | 2R | 12746607..12746661 | 241..295 | 275 | 100 | Plus |
| 2R | 25286936 | 2R | 12722972..12723007 | 9..44 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:57:40 has no hits.
FMO11617.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:55 Download gff for
FMO11617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42663-RC | 1123..1881 | 1..758 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:51 Download gff for
FMO11617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42663-RC | 1125..1883 | 1..758 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:50 Download gff for
FMO11617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42663-RC | 1125..1883 | 1..758 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:50 Download gff for
FMO11617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12734921..12735119 | 44..242 | 100 | -> | Plus |
| 2R | 12746609..12746661 | 243..295 | 100 | -> | Plus |
| 2R | 12747678..12747747 | 296..365 | 98 | -> | Plus |
| 2R | 12748913..12749306 | 366..758 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:51 Download gff for
FMO11617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8635183..8635252 | 296..365 | 98 | -> | Plus |
| arm_2R | 8622426..8622624 | 44..242 | 100 | -> | Plus |
| arm_2R | 8634114..8634166 | 243..295 | 100 | -> | Plus |
| arm_2R | 8636418..8636811 | 366..758 | 99 | | Plus |
