FMO11618.5prime Sequence
1081 bp (985 high quality bases) assembled on 2012-05-29
> FMO11618.5prime
CAGTCGACATGGTCTACATCATACCGTTCTTTAGCCACAATGACCCGCCC
GACATGATCATCACCAAAGAAAAAAGCATGGCTTGCCTGCAGGATGAGTT
CGGTCACCTAGGCATCGCCGCTACAGACCTGCCGTTCAAATCCTCCGACC
TGGACTCTCCGCCCCGCCTGCAGCATCACAACAACTATGCGGAGATCACG
GACAGCAGTGCGGAAAACACGTGCCAACAGCGCTGGCCACCTCATGTGGG
AGGAGCAGGGGCGGCCTTCGGGCATCCGGACAAGCCCATTGGCTGGATGT
ACGGACTGCTCGGATGCATGAAGCCCGTGCTTTCGTTCATCGGGAAGACG
GGGGTGATCGAGGTGAAGAGTCAGCGGAGCGAGGACTGGCAGATTCCATT
TGAGTCCATCACCGAGTTGGAATGGCTGGGAAGCGGAGCACAAGGAGCCG
TCTTCAGTGGCAGGCTAAAGAACGAGACTGTGGCGGTCAAGAAGGTGAAG
GAGCTGAAGGAAACGGACATCAAGCATCTCAGGAAGCTCGATCATGAGAA
CATTATTAAGTTCAAAGGGGTTTGCACGCAGTCACCGGTGTTCTGCATCA
TCATGGAGTTCTGTCCGTATGGCCCACTGCAGAATATCCTGAAGGAGGAG
CAAGTCATGTTACCGTCCCGCTTGGTCTCTTGGTCCAAGCAAATTGCCCT
GGGCATGCAGTATCTGCATTCCCACAAGATCATACACCGAGATCTAAAGA
GTCCAAACATACTGATTAGTACAAATGAGGTGGTGAAGATCAGCGACTTT
GGCACCAGTCGCGAGTGGAACGAGATCAGCACCAAGATGAGCTTTGCTGG
TTACCCGTAGCCTGATGGCTCCGGAAGTGATCAGGAATGATCCCGTGCTC
CGAGAAAGTGACATTTGGTCTAACGTGGTGTGCTATGGGAAATGCTCCCC
TGCAAAAACCTTACAGGATGTGGACTCATCAGCCTTTATCTGGGGTGTGG
CAAACAACTTCTCAAGCTGCTTGTTCTCGAACACCTGACTCGGAAGTGAC
TTAATTGCCTGGGTTAACCTCTGTCGAACAA
FMO11618.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wnd-RD | 3645 | CG8789-RD | 662..1727 | 8..1074 | 4695 | 96.7 | Plus |
| wnd-RC | 4512 | CG8789-RC | 584..1582 | 75..1074 | 4360 | 96.5 | Plus |
| wnd-RB | 4307 | CG8789-RB | 379..1377 | 75..1074 | 4360 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19629265..19629755 | 565..75 | 2455 | 100 | Minus |
| 3L | 28110227 | 3L | 19628152..19628343 | 757..566 | 960 | 100 | Minus |
| 3L | 28110227 | 3L | 19627831..19628097 | 1021..758 | 725 | 91.5 | Minus |
| 3L | 28110227 | 3L | 19632367..19632435 | 76..8 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:57:44 has no hits.
FMO11618.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:56 Download gff for
FMO11618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wnd-RD | 662..1693 | 8..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:33:54 Download gff for
FMO11618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wnd-RD | 662..1693 | 8..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:52 Download gff for
FMO11618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wnd-RD | 662..1693 | 8..1037 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:52 Download gff for
FMO11618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19628152..19628343 | 566..757 | 100 | <- | Minus |
| 3L | 19629265..19629753 | 77..565 | 100 | <- | Minus |
| 3L | 19632367..19632435 | 8..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:33:54 Download gff for
FMO11618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19621252..19621443 | 566..757 | 100 | <- | Minus |
| arm_3L | 19622365..19622853 | 77..565 | 100 | <- | Minus |
| arm_3L | 19625467..19625535 | 8..76 | 100 | | Minus |
