Clone FMO11627 Report

Search the DGRC for FMO11627

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:27
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8541-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11627.5prime Sequence

854 bp (854 high quality bases) assembled on 2012-05-29

> FMO11627.5prime
CAGTCGACATGGCATTCCGCTATCTCATCTCTCTGTGCGCCCTGGTGGCC
TGCGCCAATGCTGGTCTCTTGGCCAGCCATGTGGCCATTGCTAATCCGTC
GGTGGATGCCGTCGCCTCCACTCAGCAGAATGTGGTGAGGTCCTTTGCCG
GTACTGTTTCCAGCTACTCGAAGGCGGTGGACACCCCCTACTCCAGTGTG
AGGAAGAGCGACACGAGGATCCAGAACAATGTATACACTCCTGCTATTAA
GACGACCACTTATGGTGCTGCTCCTCTGTACACTCAGGCTACTCCCATTG
TGTCCAAGACTCTGGTCCATGCTCCAGCTCCCGTTGTTGAGAAGACTGTG
TACGCTGCTGCTCCAGCTCCAGTTCTGGCCAAGACTGTTTACTCCGCTCC
TGCTCCAGTTGTGGCCAAGCACGTTTATTCCGCTCCAGCTCAGGTTTATG
CTCCTGCCGCCCCAGTTGTGGCCAAGACCGTGTACTCTGCTCCTGCTCCA
GTTTACGCTGCTCCTGCTCCAGTTTATGCTGCACCCGCTCCAGTTGTAGC
CAAGACCGTGTACTCCGCACCAGCTCCAGTTCTGGCCAAGACCGTGTACT
CTGCTCCAGCTCCAGTTTATGCTGCTTCCGCACCGGCTGTGGCCAAGACT
GTGTCCTATGCCGCCCCACTGGCCACCACCAATGTGAACCATGGACCAGC
TGCCACCACCTACACCCACAATGCTCCAGCTCTGGGCGTTCTCCAGCTAT
GGAAGCTCCCAGACGGTTCACTATTCCCCCCGCAGAGAGTGTGTCGCACA
TGAGCTTCGATGGGATTCGGAACCCACTGGGGTTTCGCAAGCTTTCTAGA
CCAT

FMO11627.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8541-RA 956 CG8541-RA 50..876 7..836 4075 99.6 Plus
CG8541-RA 956 CG8541-RA 399..533 527..661 315 82.2 Plus
CG8541-RA 956 CG8541-RA 570..704 356..490 315 82.2 Plus
CG8543-RA 801 CG8543-RA 383..610 351..581 305 76.4 Plus
CG8543-RA 801 CG8543-RA 476..627 360..520 245 77.6 Plus
CG8543-RA 801 CG8543-RA 554..612 561..619 220 91.5 Plus
CG8541-RA 956 CG8541-RA 505..555 576..626 210 94.1 Plus
CG8541-RA 956 CG8541-RA 619..669 462..512 210 94.1 Plus
CG8543-RA 801 CG8543-RA 200..336 105..241 205 76.6 Plus
CG8541-RA 956 CG8541-RA 363..453 530..617 195 82.4 Plus
CG8541-RA 956 CG8541-RA 475..546 510..581 195 84.7 Plus
CG8541-RA 956 CG8541-RA 553..624 432..503 195 84.7 Plus
CG8541-RA 956 CG8541-RA 573..660 320..410 195 82.4 Plus
CG8543-RA 801 CG8543-RA 560..610 360..410 195 92.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7471608..7472434 7..836 4000 99.6 Plus
3L 28110227 3L 7471957..7472091 527..661 315 82.2 Plus
3L 28110227 3L 7472128..7472262 356..490 315 82.2 Plus
3L 28110227 3L 7469676..7469734 520..462 220 91.5 Minus
3L 28110227 3L 7469691..7469749 619..561 220 91.5 Minus
3L 28110227 3L 7472063..7472113 576..626 210 94.1 Plus
3L 28110227 3L 7472177..7472227 462..512 210 94.1 Plus
3L 28110227 3L 7469967..7470103 241..105 205 76.6 Minus
3L 28110227 3L 7472033..7472104 510..581 195 84.7 Plus
3L 28110227 3L 7472111..7472182 432..503 195 84.7 Plus
3L 28110227 3L 7469693..7469743 410..360 195 92.2 Minus
Blast to na_te.dros performed 2014-11-28 02:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2774..3019 550..303 156 55.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2772..2854 531..449 127 61.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2751..2854 531..428 124 57.7 Minus

FMO11627.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:28 Download gff for FMO11627.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8541-RA 1..828 9..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:21 Download gff for FMO11627.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8541-RA 45..879 1..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:40 Download gff for FMO11627.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8541-RA 45..879 1..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:40 Download gff for FMO11627.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7471603..7472437 1..840 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:21 Download gff for FMO11627.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7464703..7465537 1..840 99   Plus