Clone FMO11629 Report

Search the DGRC for FMO11629

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:29
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9125-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11629.5prime Sequence

1100 bp (991 high quality bases) assembled on 2012-05-29

> FMO11629.5prime
CAGTCGACATGGCCGAGAACGCGGGCTTCATCAGTGTGCCCTGGGGGCAG
CACAAGCTGGGCGCGATGTACAATACGCCGTTTCCCTCGATAAGCCGCCC
GAAGTGCATCGGTGTGTGCAGCATAAACGCTAGCCGGGAATTTGTGGACG
ACGCCAGCTGCGCCAGCTACTTGGCTGGCCAACCGTGGCCACCGCTGCCG
TTCGATCTTAACGGGGGTATAGAGGATGTGATCCGTAAGCCCGTCGAGAA
CGGCAAACGGGATCTGGAAATTATGCTGACCTACATTAAGCAACACCAGA
AGGAGCTGCTCCGTCAGAGTAGCTCCGATGCGAGAAATCTACGCCTGGAC
AGCGACTTTGTAACACTGCGCGGTATTTTGCGGCAGATAATGTGCCTGCA
GTATGATAATCGCTCATTCCGCGTCAAGGCGACGCTCCTGAACGGCAACG
TCTACATGTGCAAGGAGGAAACCCCAGAGCAGCAGCTGGAGAACGCGAAC
ATGAGCAGGGCACAGCGGGTCATGTGCTCCTGGGGCTTCAAGTTCGAGCA
GTACCTGACCAGTGCCCAGGCGCAGGGAAAACCGGTGACCAATGTGCCGG
TCAACGAGGCAGAGGAGTTCATGGGCGTGTACCGCACGAACCTGGCCGGG
ATTTTGATGCTATACGGCGCCGAACTGGACTGTGTGGACAGCAAGGAGCC
AGTTGACTTCAAAGATTGCAGAGTGCTCGACTCATTGAAATTCGTAGAGC
TAAAGACCAGCGTCTTCAATATGAACCCTCACCAAATTCGCACCTTTCAA
ATCGTTCAAGTCTGCCAACTGGTGGAGTCAGTCATTCCCTGGTGGGCATC
ACTACGCTCTACGTGGGACTCCGCGACACCAAAGGCATGCTTGCAGAGGA
TCGATGAGATCGATGTGGCAACACTGGCCCGCAACAAACCGTGAGTGCAT
CGGCAATGGCTTGTTCCTTGAACAGTTCTGCGCAATCTTTAAGAAGCTGC
TTGTGACATTTACGAATCCGTTTGCGGCGCCCAGTTGACTTTTTAAATAG
ACAGCCCAGACTACGAAGTGTTGGCCCGGTTCCGGTACTACACAATTCCT

FMO11629.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9125-RA 1329 CG9125-RA 94..1155 9..1070 4860 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16802557..16803251 703..9 3475 100 Minus
X 23542271 X 16802147..16802469 1027..704 1135 94.8 Minus
Blast to na_te.dros performed on 2014-11-28 02:57:55 has no hits.

FMO11629.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:58 Download gff for FMO11629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9125-RA 1..1042 9..1049 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:01 Download gff for FMO11629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9125-RA 88..1135 1..1049 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:57 Download gff for FMO11629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9125-RA 88..1135 1..1049 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:57 Download gff for FMO11629.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16802123..16802469 704..1049 94 <- Minus
X 16802557..16803256 1..703 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:01 Download gff for FMO11629.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16696156..16696502 704..1049 94 <- Minus
arm_X 16696590..16697289 1..703 99   Minus