Clone FMO11638 Report

Search the DGRC for FMO11638

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:38
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13658-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11638.5prime Sequence

1101 bp (935 high quality bases) assembled on 2012-05-21

> FMO11638.5prime
TTTAATAGCGGATGAGGTGGATGCCCCAGCTTGGCTAAATGCGGAACTTA
TCGAGGGCGCTCTAAGAGCTTATGAAAAGGATCCTGAATTGCATGTAACT
GATTTGAAAATTAGTCCTGCGACTCTGCAGGGAGATCATTATGCCAGCGT
CATGTTCCGAGCTGTTTCCCACTACTCCACCGCCAAGGGGAATTTCTCCA
AGGCACTGATAGTTAAAACAATGCCGGAACAGGAAGGTCACAAAAAGGAT
ATGCTGTCAAATTCGCCGATATTCAAAACGGAGATCTTAATGTACAGCAA
AGCTCTTCCAGAGCTCGAGAGAATTCTCCGGGAGGCAGGGGTTACTACCA
AGCTCTATGCGCCTTGTATCTATCACAGCTTGGAACCTCATCAGGTGATG
ATATTCTAGGATCTGGTGCCACAGGGGTACACCGTCATCCGAGATCGTTA
TCCTAATAAAGAAGAACTTCAGAAAGCCTTCTTCAAGTTGGCAAAGTGGC
ATGCAGCCAGCATGAAAGTTTTAAATGAGCGACCTGACTTTCTTAAGGAA
TTTAAGTATGGGTTATGGGGCATGCCCAACTTTTCTGAACGATTCTATAG
TGACAACTGGAGTACCCTGTTTCCTGGAAATGTTAGACAAGGTTCCGGAA
CTCACGAAATATAAGCCGTATTTCGAAAAAATAAAAGGATAACTACATTC
AGCAGATGAGTGCAGTCATGGAAGAATATCGCACTAATCCCGAAGCCAAA
TAGGTACTACGTGCTGTGTCACGGGGATTTTCATGGGCGCAACATGATGT
TTAGGTATAACAAAGAAACAGGGTCCTTTTCGAGGACGTAATGCTGGTGG
ATTTCCAGATCAGTAATTGTTTGCCCCCTTTCCATGACCTAAATTTACTC
CATCTTCATGGTAATGGATACGGAGGATCGTTGGGATCTTGTAAGGAATA
TAATCATTATTATTTCTCTGTTCTGGCGACACTCTGAAAAAAATAAGCTT
CCAAGGTGAAATGCCAACTCCAAACGGATGTGGGAGCATAATCCATGGGC
CATAAGAATTACGATTCCTCATGATGACCAGCTTTTCTACCCCTGGTGCC
T

FMO11638.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13658-RB 1334 CG13658-RB 39..1130 1..1098 4885 97.3 Plus
CG31104-RA 1382 CG31104-RA 208..646 128..566 575 76 Plus
CG11893-RA 1415 CG11893-RA 66..862 1..801 560 72.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25287518..25288039 8..529 2580 99.6 Plus
3R 32079331 3R 25288096..25288584 528..1020 1930 96 Plus
3R 32079331 3R 25285680..25285997 128..445 525 77.7 Plus
3R 32079331 3R 25289963..25290750 11..801 370 70.7 Plus
3R 32079331 3R 25283844..25284164 128..448 270 72.3 Plus
Blast to na_te.dros performed on 2014-11-28 02:52:37 has no hits.

FMO11638.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-21 12:21:56 Download gff for FMO11638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13658-RB 39..1133 1..1101 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:39 Download gff for FMO11638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13658-RB 39..1133 1..1101 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:23 Download gff for FMO11638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13658-RB 39..1133 1..1101 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:23 Download gff for FMO11638.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25287512..25288039 1..529 99 -> Plus
3R 25288098..25288626 530..1063 95 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:39 Download gff for FMO11638.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21113234..21113761 1..529 99 -> Plus
arm_3R 21113820..21114348 530..1063 95 -> Plus