Clone FMO11639 Report

Search the DGRC for FMO11639

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:39
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3690-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11639.5prime Sequence

1078 bp (941 high quality bases) assembled on 2012-05-29

> FMO11639.5prime
CAGTCGACATGAGCGAGCCCAGTGAATCCGGCGATCCCAAGCCTCACAAG
ACTGCCGAGCACCAAATTGGGGATCCTCCCCAAAAAGAGGCGGCAGCTGA
TTTCGAGGCAGCCATCGATGCCGCTGGCTTTGGAATGTTCAACATCCTCC
TGCTGGTGGCCGCCGTGCCAGCGGCCATGGGCACCGTCTACGAGACCTCC
ACGATGTCCTACATCCTGCCCAGCGCCGAGTGTGATCTTAAGCTGAGCCT
CCTGGACAAGGGCATCCTGAATGCCATTACCTATGCGGGCATGATCAGTT
CGGCGGTGCTTTGGGGCTACTTGGCCGACATCAAGGGCAGAAGAAACCTC
CTGATTGTGGGCTATGCCGCCGATACGATATGCGTTTTGGGCGGAGCACT
CAGTCAAAGTAGGATCCAACTGATGGTTTTTAAATACCTTGGAGGCTTTT
GTATGAGTGGCCCCTTTGCCGTTCTTATGACCTATTTGACGGAACTCCAT
GGACGGAAGCATCGACAGCGTATCATGATGATGGTGGGCATCATGTTCTC
AATTGCAACGCTAACGCTACCGGGACTGGCCATGCTGATATTGCCCGAGA
CGTGGAACATTCAGATCTGGACTTTGTCGTTAACATCCTGGCAGTTTTTC
GTCGCCGTCACCGCACTTCCCAGTCTTCTGAGCTTTGTGCTTTTCTTTTT
CTTTCCCGGAGAGTCCCAAGTTTCTCATGTCCAAAGGGCGCAACCGGGAA
GCCCTGGATGCCTTCAAGTTTCATGTATCACCTGAACCTCGAGAAAACCC
AAGGACTCGTTTTCCAATCAATTGCTGGCCAATGAATTTAATTGTTTCCG
GTAAAAAGCACGCGAAGGATGAACAATCCCGACTGAGCTTAAACTTCCGA
CGGAGTGCGTCGAATTCAGGATCAGAAAATCAGGACTCGAAAGAGCTCCC
TGCGTTCGGCTTCCCGCAGCTTCGTCCCCTTTTCCACAAACCTACTTGGG
CTTATCCCTTTGGGTGTATCTCCTCACTTTTGCGTGTCCTGGGACAAATC
ACTTGGCGAATTGTGGCTGCCCCAATGG

FMO11639.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3690-RB 2540 CG3690-RB 19..1089 9..1075 4725 96.9 Plus
CG3690-RA 2073 CG3690-RA 19..1089 9..1075 4725 96.9 Plus
CG14691-RC 1675 CG14691-RC 230..329 217..316 245 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 951440..951882 451..9 2215 100 Minus
X 23542271 X 951197..951376 630..451 900 100 Minus
X 23542271 X 950661..950837 812..633 735 97.8 Minus
X 23542271 X 950372..950595 1036..820 545 91.1 Minus
3R 32079331 3R 10755306..10755405 316..217 245 83 Minus
Blast to na_te.dros performed on 2014-11-28 02:58:16 has no hits.

FMO11639.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:02 Download gff for FMO11639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3690-RA 1..1074 9..1078 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:16 Download gff for FMO11639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3690-RA 8..1092 1..1078 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:09 Download gff for FMO11639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3690-RA 8..1092 1..1078 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:09 Download gff for FMO11639.5prime
Subject Subject Range Query Range Percent Splice Strand
X 950364..950599 817..1043 91 <- Minus
X 950658..950839 631..816 96 <- Minus
X 951197..951375 452..630 100 <- Minus
X 951440..951886 1..451 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:16 Download gff for FMO11639.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 844397..844632 817..1043 91 <- Minus
arm_X 844691..844872 631..816 96 <- Minus
arm_X 845230..845408 452..630 100 <- Minus
arm_X 845473..845919 1..451 99   Minus