FMO11640.5prime Sequence
440 bp (440 high quality bases) assembled on 2012-05-29
> FMO11640.5prime
CAGTCGACATGGCATTTTGCATAGCAGTTATTGGCAAGGATAACGCCCCC
CTGTACCTGACCACATCCGATATGGAGCAGGAACTGGAATTGCAATATCA
TGTTAACGCCGCCTTAGACGTCGTGGAGGAGAAGTGCCTGATTGGCAAGG
GTGCTCCGGAGTCCAAGGAGCTGTACCTGGGACTGCTCTACTCGACAGAG
AACCACAAAATATACGGCTTTGTGACCAACACTCGGGTGAAATTCATAGT
GGTCATCGACTCCAGCAACGTTGCCCTTCGGGAAAACGAAGTTCGAGCAA
TCTTCCGAAATCTCCACTTGCTCTACACCGATGCCATCTGCAATCCCTTT
TACATTCCCGGCGAATCGCTGACTTCAAAGAAGTTCGATCGCGCTGTCCA
GAAACTGATGAGCGGCACTGCCGCAAGCTTTCTAGACCAT
FMO11640.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9067-RA | 548 | CG9067-RA | 89..502 | 9..422 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11279335..11279508 | 215..42 | 855 | 99.4 | Minus |
| 2R | 25286936 | 2R | 11279191..11279278 | 299..212 | 440 | 100 | Minus |
| 2R | 25286936 | 2R | 11279045..11279125 | 380..300 | 405 | 100 | Minus |
| 2R | 25286936 | 2R | 11278939..11278981 | 422..380 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:58:20 has no hits.
FMO11640.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:03 Download gff for
FMO11640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9067-RA | 1..425 | 5..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:18 Download gff for
FMO11640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9067-RA | 89..507 | 9..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:10 Download gff for
FMO11640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9067-RA | 89..507 | 9..429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:10 Download gff for
FMO11640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11278934..11278981 | 380..429 | 94 | <- | Minus |
| 2R | 11279046..11279125 | 300..379 | 100 | <- | Minus |
| 2R | 11279191..11279278 | 212..299 | 100 | <- | Minus |
| 2R | 11279339..11279508 | 42..211 | 100 | <- | Minus |
| 2R | 11279563..11279595 | 9..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:18 Download gff for
FMO11640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7167068..7167100 | 9..41 | 100 | | Minus |
| arm_2R | 7166439..7166486 | 380..429 | 94 | <- | Minus |
| arm_2R | 7166551..7166630 | 300..379 | 100 | <- | Minus |
| arm_2R | 7166696..7166783 | 212..299 | 100 | <- | Minus |
| arm_2R | 7166844..7167013 | 42..211 | 100 | <- | Minus |
