Clone FMO11643 Report

Search the DGRC for FMO11643

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:43
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG7587-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11643.5prime Sequence

453 bp (453 high quality bases) assembled on 2012-05-29

> FMO11643.5prime
CAGTCGACATGTTCAATATTATCCTTCTGGCAACAATCCTAGTGAGCGTG
GCTCAGGCCACAATCATCATTAAGCCCGAAAATCCCGTGGAGGAGACCAC
CAAGTGCCAGATCTACTGGCGCGAACACGCCTGGGCTCTTGAAGATTGTG
TGTGCCGGGTCTTCCAGAACGGCTGTCTTCTGAACGAGGAGAGCAATCGG
CGGGAAAAGGCTGGAAAAACCCCTCTAATTCCGGTCACCGAGCAGGTGTG
CCAGAAGTTCATCAAGCGCAAGTGCTTCCTTGGATGGCCTGTGCTGGCCA
AGTTCCCGATTCCATCGCCATGCGGATGCAATGGCAAACAGGGCAGTCTG
GAAATCAAGAAGTTTTTGAGTCTGTGCGAACTGCAGAAGTACGCAGCTGA
ATGCAACAAACCCTATATCAGCTACTCGAAGTGTGCAAGCTTTTCTAGAC
CAT

FMO11643.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7587-RA 550 CG7587-RA 38..463 9..434 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17594423..17594636 9..222 1070 100 Plus
3R 32079331 3R 17594702..17594890 223..411 945 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:55:42 has no hits.

FMO11643.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:31 Download gff for FMO11643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7587-RA 38..466 9..438 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:32 Download gff for FMO11643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7587-RA 38..466 9..438 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:49 Download gff for FMO11643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7587-RA 38..466 9..438 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:49 Download gff for FMO11643.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17594423..17594636 9..222 100 -> Plus
3R 17594702..17594890 223..411 100 -> Plus
3R 17594948..17594973 412..438 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:32 Download gff for FMO11643.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13420145..13420358 9..222 100 -> Plus
arm_3R 13420424..13420612 223..411 100 -> Plus
arm_3R 13420670..13420695 412..438 92   Plus