Clone FMO11647 Report

Search the DGRC for FMO11647

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:47
Vector:pMK33-CFH-BD
Associated Gene/TranscriptRFeSP-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11647.5prime Sequence

716 bp (716 high quality bases) assembled on 2012-05-29

> FMO11647.5prime
CAGTCGACATGATGAACGCCGTGTCGCGTGCTTACGTCAGAGGCGGAGCC
CAGGTCCTCTCCACGGGATTGAAGGCGAGCGGCGTGGCCGTCAACTCGAT
GGCCAATCGCCAGGCACACACCGACCTGCAGGTGCCAGACTTCTCGGCAT
ACCGCCGGGAGTCCGTGAAGGACAGTCGTCGTCGCAACGACACCGCCGAG
GAGCGCAAGGCCTTCTCCTACTTGATGGTCGGCGCCGGAGCCGTGGGCGG
TGCCTATGCGGCCAAGGGCCTGGTTAACACCTTCATCGGATCGATGAGCG
CCTCCGCCGAAGTGCTGGCCATGGCCAAGATCGAGATCAAGCTGTCCGAC
ATCCCGGAGGGCAAGTCGGTTACTTTCAAGTGGCGCGGAAAGCCCCTGTT
CATCCGCCACCGCACGGCCGCGGAAATCGAGACCGAGCGAAATGTGCCCA
CATCCACGCTGCGCGATCCGGAGGCTGATGATCAACGTGTGATCAAGCCC
GAGTGGCTGGTGGTCATCGGAGTGTGCACGCATCTGGGCTGTGTGCCCAT
CGCGAACGCCGGCGACTGGGGTGGCTACTACTGCCCCTGCCACGGCTCCC
ACTACGACGCCTCCGGAAGGATCCGCAAGGGACCCGCGCCCCTCAACTTG
GAGGTGCCCACCCACGAGTTCCCCAACGAGGGTCTTCTCGTGGTCGGCGC
AAGCTTTCTAGACCAT

FMO11647.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
RFeSP-RE 1000 CG7361-RE 85..774 9..698 3450 100 Plus
RFeSP-RD 1118 CG7361-RD 85..774 9..698 3450 100 Plus
RFeSP-RB 851 CG7361-RB 85..774 9..698 3450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1613044..1613424 482..102 1905 100 Minus
2L 23513712 2L 1612773..1612988 698..483 1080 100 Minus
2L 23513712 2L 1613983..1614076 102..9 470 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:55:35 has no hits.

FMO11647.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:30 Download gff for FMO11647.5prime
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 99..796 1..698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:27 Download gff for FMO11647.5prime
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 77..774 1..698 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:45 Download gff for FMO11647.5prime
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 77..774 1..698 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:45 Download gff for FMO11647.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1612773..1612988 483..698 100 <- Minus
2L 1613044..1613423 103..482 100 <- Minus
2L 1613983..1614084 1..102 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:27 Download gff for FMO11647.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1613983..1614084 1..102 96   Minus
arm_2L 1612773..1612988 483..698 100 <- Minus
arm_2L 1613044..1613423 103..482 100 <- Minus