Clone FMO11648 Report

Search the DGRC for FMO11648

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:48
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12269-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11648.5prime Sequence

347 bp (347 high quality bases) assembled on 2012-05-29

> FMO11648.5prime
CAGTCGACATGAAGAGCGACGAGATCATCGAGAAGATACGCAACAAGTTG
AAGGAATCGGATCCTGCCCGGCGCACCGTCGTCAACACGTTTCAGTTCAA
CTTCACCGATGCGGATGGTAATCTCATCAAGAGCATGGCGTTGGACATCT
ACGAGGGGAGTGCCACCAGTGTCGATGCACAGGTCACCATTTCCGATGAG
GACTTCTACTTGGTGGGCACTAAGCAGAAGACTTTCCAGGAGGTGTTGCA
GCAGGAGAAGGCTAAGATCGATGGCGATGAGGAGGCTATCAACAAAATGC
TGGAGAAGTTTCGCATAAATTCTCAAAACGCAAGCTTTCTAGACCAT

FMO11648.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12269-RA 462 CG12269-RA 35..357 7..329 1615 100 Plus
CG12269-RB 477 CG12269-RB 35..372 7..329 1455 95.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18978378..18978569 329..138 960 100 Minus
3R 32079331 3R 18978644..18978775 138..7 660 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:55:38 has no hits.

FMO11648.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:31 Download gff for FMO11648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12269-RA 27..362 1..336 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:29 Download gff for FMO11648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12269-RA 27..362 1..336 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:47 Download gff for FMO11648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12269-RA 27..362 1..336 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:47 Download gff for FMO11648.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18978644..18978777 1..138 97   Minus
3R 18978373..18978568 139..336 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:29 Download gff for FMO11648.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14804095..14804290 139..336 98 <- Minus
arm_3R 14804366..14804499 1..138 97   Minus