Clone FMO11649 Report

Search the DGRC for FMO11649

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:49
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8087-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11649.5prime Sequence

452 bp (452 high quality bases) assembled on 2012-05-29

> FMO11649.5prime
CAGTCGACATGAAGGCCACTACTATTCTAGCCGTTGTTTCCGTGCTCACC
GCTTGTCTTTTGAGGAGCAGCGAGGCGGTGACCTGCACCGCCGATGCCAC
TGTCACAGGATGCATTGACTGCACCACCAATCCAACCGATTCCGAGTGCG
TGGCCGAGGCAGCCGCCGATACAACCAGTACAACTGTAGCAACGCCCACC
ACCACCGCCACCACAACATCAGCGACGGCGACCACCACTGCGGCCTCCAG
CACAAACACTTCCTCCGGACGGCGAAAGATCGTGCGCATCACCAATCTGC
GCTACACCAACGTTCGGCGCATCCGCGTCAACCGGAATGGATCGGGGAGC
ACCACCGTCCGGAATCGGAGGCGCAGGAACAACTCCAGACGTGTCAACGT
GAGGCGGGCCAATGGAAACGTTATTGTTGTCGGCGCAAGCTTTCTAGACC
AT

FMO11649.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8087-RA 483 CG8087-RA 24..449 9..434 2130 100 Plus
CG14851-RA 506 CG14851-RA 74..198 60..184 445 90.4 Plus
CG14850-RA 587 CG14850-RA 92..202 50..160 360 88.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14564357..14564782 434..9 2130 100 Minus
3R 32079331 3R 14562413..14562537 60..184 445 90.4 Plus
3R 32079331 3R 14561026..14561136 50..160 360 88.3 Plus
Blast to na_te.dros performed 2014-11-28 02:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2388..2503 160..269 108 56.9 Plus

FMO11649.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:34 Download gff for FMO11649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8087-RA 1..430 9..439 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:43 Download gff for FMO11649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8087-RA 15..453 1..439 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:58 Download gff for FMO11649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8087-RA 15..453 1..439 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:58 Download gff for FMO11649.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14564353..14564790 1..439 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:43 Download gff for FMO11649.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10390075..10390512 1..439 98   Minus