Clone FMO11650 Report

Search the DGRC for FMO11650

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:50
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1138-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11650.5prime Sequence

855 bp (-60 high quality bases) assembled on 2012-05-21

> FMO11650.5prime
TTTAGGACCAAAATTTATCGTGCAAGGCAGCAGGAATAAGTAAAATGGAA
AACACTAAACCAAATGATAAGAAACTGGCACAATCAAAGTTCGCATTCAA
ACATAACGGGCCAAAAAAATTGTTTCACTGCACGATGCAGAGTGTTTTGC
AATCCGAAGATTGCTGGATCGCTGAGGATGTTCTATAAGAATCAAACGAG
AAAAGCAATCTGGAACTCGAAGATATTTACGATGAGGTGTTTCGCTTAAA
GCGGCGCGTAAATCGACTCAATTACCAACTAGGTACCAATATACCGGAAT
GCCCAAAAATAGATCCCTGCCTGGATGATCATATATTTTTGACAAATGTA
AAGGAAGTTCATCCCGAAATTCTTCAGCTGAAGTTTGCAAGCCATAAACT
ACAGCACCTACTGACTCAGATGCAATCCGTCCGAAGATCATCCAATCTGG
CCAAAAAACTGGTACGGGATGAATACTGCAAAAGCACGAAATTAGGGGAT
CAATTGCAGATTGAAATTCAAAAACTAGACTCCTTTAAGCTCAATTCGAA
AAACATCAAGGACTATGTCTTCAACGGTTTAGGTTCTTGGACCAAGATAA
GTATACTGGCAGGGAGTTCTATGAATTTATAGAAAAAAGTAATGAGATGA
TAACAACTCAACTTAAAAAGCAGATGTTAAAGAGTGAATACAAACCTTTT
TCGGAGGAACCGCTAGGTGACATCTCTTTAAAACAGCCGCGGAAATTTGC
AAGATTATCTTTCAAGCGTGATAAATAACCAAAATGTGAAATCTTCCAGA
CCGTGAAAATTCCTGTGTATCCATTTCGTTCAGACCTTGCAAGCTTTCTA
GACAT

FMO11650.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1138-RA 1398 CG1138-RA 116..956 5..838 3805 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6597067..6597907 838..5 3580 97.5 Minus
Blast to na_te.dros performed on 2014-11-28 02:52:41 has no hits.

FMO11650.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-21 12:22:02 Download gff for FMO11650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1138-RA 113..959 1..842 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:41 Download gff for FMO11650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1138-RA 113..965 1..847 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:41:24 Download gff for FMO11650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1138-RA 113..965 1..847 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:41:24 Download gff for FMO11650.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6597062..6597908 1..844 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:41 Download gff for FMO11650.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2422784..2423630 1..844 96   Minus