Clone FMO11655 Report

Search the DGRC for FMO11655

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:55
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3880-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11655.5prime Sequence

801 bp (800 high quality bases) assembled on 2012-05-29

> FMO11655.5prime
CAGTCGACATGCTCCGCCAGAACAAGAATACCAGTACCAGTCTGCTGAAC
CTAAGCATAGGCGATGTGGGAGGCAGCCATCCACAGGGGCAGTCGCAATT
TTGGGAACTGGATACGCTGCCTAAGCAGTTCGTCCTGTCCATGAAAAAGC
TCTTCGACATCTTAGATGACAAGCAGACCGGATACGTGCGCTTCACGGAC
ATCGAGAAGGGCTGGCAGGATGATGGCTCCAAGGGACTGCCACGCGGAGT
TGTGGACTCACTCCGTCGGGTCACTCCCAGTAGCGGACTTCTCTCCTTCG
AGCGGTTCTGCGCCGGCCTCAAGCTGTGCCTGCTCCGCAATCAGCAAAAC
GCTGTGGAAGACCTGAAGTTGCGGCCTCGTTCCCACGGAACTCTTGCTCC
GGAGATGGAGTTCCATTCTCCTGCTCCGCCGCCAAAACCTCCACGACAGG
TACCCAAGTCCCCTGCTCTGGGTAAAGACGACATTCGCCATGCCCTCCAA
AACTGGCAGCTGAACCTGATGGCGGACGCAGGAAAGTCAAAAACGACGCA
GTCGCGGGAACAATTCGAACACCGTGGATCGGCTGACGGTGGCTCTTCCT
CCACCTCTGCTTCGGCCACCGACTGGAGCCTGGCTCTTCCGGCTGTGCCC
AAGAAGACCAGCAGCAAGCGCAGAGAGTCGCGGATGCACACTCTGCATCA
CTGCATCGATTACAACATGCTAAAAAGACTGAAGCAATTGTAGGAGCATC
GGGAACCTGCTTCTTTTCCGGACTCGATGGCGTGGATAATGCACGCGATT
G

FMO11655.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3880-RA 1451 CG3880-RA 190..980 9..801 3780 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24761288..24762078 9..801 3730 98.6 Plus
Blast to na_te.dros performed 2014-11-28 02:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 17..103 417..504 113 60.2 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 6956..7042 417..504 113 60.2 Plus

FMO11655.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:07 Download gff for FMO11655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3880-RA 91..881 9..801 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:33 Download gff for FMO11655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3880-RA 190..980 9..801 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:22 Download gff for FMO11655.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3880-RA 190..980 9..801 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:22 Download gff for FMO11655.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24761279..24762078 1..801 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:33 Download gff for FMO11655.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20648802..20649601 1..801 98   Plus