Clone FMO11656 Report

Search the DGRC for FMO11656

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:56
Vector:pMK33-CFH-BD
Associated Gene/TranscriptEdg78E-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11656.5prime Sequence

392 bp (392 high quality bases) assembled on 2012-05-29

> FMO11656.5prime
CAGTCGACATGTACAAATATCTGTTCTGTCTTGCTCTCATCGGCTGCGCC
TGCGCCGACAACATCAACAAGGATGCCCAGATCCGCAGCTTCCAGAACGA
CGCTACCGATGCTGAGGGCAACTACCAGTACGCCTACGAGACCAGCAATG
GCATCCAGATCCAGGAGGCGGGCAACGCCAACGGAGCACGTGGTGCCGTG
GCTTACGTGTCGCCCGAGGGCGAGCACATCTCGCTGACATACACCGCCGA
CGAGGAGGGCTACCATCCAGTGGGTGACCACCTGCCCACCCCGCCCCCAG
TTCCGGCTTACGTTCTCCGTGCCCTGGAATATATCCGCACCCATCCCCCG
GCGCCCGCCCAGAAGGAGCAGCAGGCAAGCTTTCTAGACCAT

FMO11656.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Edg78E-RB 546 CG7673-RB 76..442 8..374 1835 100 Plus
Edg78E-RA 967 CG7673-RA 76..442 8..374 1835 100 Plus
Cpr78Cc-RA 522 CG7658-RA 148..377 106..335 250 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21297288..21297641 374..21 1770 100 Minus
3L 28110227 3L 21300797..21301026 106..335 250 73.9 Plus
Blast to na_te.dros performed 2014-11-28 02:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\ISBu2 726 Dbuz\ISBu2 ISBU2 726bp 588..644 212..158 108 70.2 Minus

FMO11656.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:36 Download gff for FMO11656.5prime
Subject Subject Range Query Range Percent Splice Strand
Edg78E-RA 70..448 1..381 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:48 Download gff for FMO11656.5prime
Subject Subject Range Query Range Percent Splice Strand
Edg78E-RA 70..448 1..381 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:01 Download gff for FMO11656.5prime
Subject Subject Range Query Range Percent Splice Strand
Edg78E-RA 70..448 1..381 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:01 Download gff for FMO11656.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21297282..21297641 21..381 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:48 Download gff for FMO11656.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21290382..21290741 21..381 99 <- Minus