FMO11657.5prime Sequence
479 bp (479 high quality bases) assembled on 2012-05-29
> FMO11657.5prime
CAGTCGACATGTCTGCCACTCCTCCAACAACACCTGCGCCCACGGCTGCA
GCTTCCGCCGGAAAGGGTCTTCACTCCAGGGCATATAATGGACTTATCAA
GGCCTGCGACAAGTATGTGCCCCCCAAGATGCGACCCTTGTGGATGCACC
CAGCAGGACCCAAGACCATATTCTTTTGGGCTCCAATCGTTAAGTGGAGC
CTCGTTATCGCGGGTCTCAGTGATTTGACGCGTCCTGCGGACAAGATTTC
GCCTAACGGATGTCTGGCTCTTGGGGCAACGAACCTCATCTGGACGCGCT
ACTCTCTGGTGATCATTCCCAAGAACTACAGCTTGTTCGCGGTTAATCTC
TTCGTGAGTCTGACGCAGCTCTTCCAATTGGGTAGGTACTACAACTACCA
GTGGGAGCAGTCGAGGCTGGAGAAAAATGGCGAGCAATGCCCGGCTATTG
AAGCCAGTTTGGCAAGCTTTCTAGACCAT
FMO11657.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9396-RA | 681 | CG9396-RA | 157..609 | 9..461 | 2265 | 100 | Plus |
| CG9399-RE | 1108 | CG9399-RE | 119..423 | 52..356 | 385 | 75.5 | Plus |
| CG9399-RD | 1017 | CG9399-RD | 331..635 | 52..356 | 385 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9570486..9570750 | 461..197 | 1325 | 100 | Minus |
| 3R | 32079331 | 3R | 9571231..9571379 | 157..9 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 9572596..9572666 | 356..286 | 250 | 90.1 | Minus |
| 3R | 32079331 | 3R | 9571133..9571176 | 197..154 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:58:50 has no hits.
FMO11657.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:37:08 Download gff for
FMO11657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9396-RA | 152..609 | 1..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:34 Download gff for
FMO11657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9396-RA | 152..609 | 1..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:23 Download gff for
FMO11657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9396-RA | 152..609 | 1..461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:23 Download gff for
FMO11657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9570486..9570749 | 198..461 | 100 | <- | Minus |
| 3R | 9571133..9571173 | 157..197 | 100 | <- | Minus |
| 3R | 9571232..9571383 | 1..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:34 Download gff for
FMO11657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5396208..5396471 | 198..461 | 100 | <- | Minus |
| arm_3R | 5396855..5396895 | 157..197 | 100 | <- | Minus |
| arm_3R | 5396954..5397105 | 1..156 | 97 | | Minus |
