Clone FMO11659 Report

Search the DGRC for FMO11659

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:116
Well:59
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13012-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11659.5prime Sequence

413 bp (413 high quality bases) assembled on 2012-05-29

> FMO11659.5prime
CAGTCGACATGGACTTGAAAATGGAGCTGGGCGGCTACGTGCACTCCGCA
CCCAACACCAAGCGCTTCGTTGTGGAGGACTCGATTACCAAGGTGACCTC
TGATGGGGAGCCGCACGGCATGATGACCATGGTGGCCGGATTATCCGGCC
TTTTGGCGGCCATCATCATTTTGGCCGTCCTCGTGTCCATGGTATCTTGT
CGCAAGCAGAAGAGCACCAACCGGAAGAGCAATTCCTCCGCCAATGTGGT
GGCCATGACCAGTGTGGCGCAGGATCAGCCCCAGTTGGCCGGTAACTTGA
ACGCAGCGTTCGCTGAGAGCACTCTGACCTTGGACAAGGTCAAGCAGGAC
ACAGAGGATCAATGGCGACCCACAGCCGTGGTGGTGGAGCGGTACGCAAG
CTTTCTAGACCAT

FMO11659.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13012-RE 1199 CG13012-RE 585..973 7..395 1945 100 Plus
CG13012-RD 740 CG13012-RD 126..514 7..395 1945 100 Plus
CG13012-RC 1234 CG13012-RC 620..1008 7..395 1945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16669044..16669226 395..213 915 100 Minus
X 23542271 X 16669313..16669442 214..85 650 100 Minus
X 23542271 X 16670057..16670134 84..7 390 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:55:49 has no hits.

FMO11659.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-29 09:36:33 Download gff for FMO11659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13012-RB 105..497 1..395 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:32:38 Download gff for FMO11659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13012-RC 613..1008 1..395 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:53 Download gff for FMO11659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13012-RC 613..1008 1..395 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:53 Download gff for FMO11659.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16669044..16669224 215..395 100 <- Minus
X 16669313..16669442 85..214 100 <- Minus
X 16670057..16670138 1..84 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:32:38 Download gff for FMO11659.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16563077..16563257 215..395 100 <- Minus
arm_X 16563346..16563475 85..214 100 <- Minus
arm_X 16564090..16564171 1..84 96   Minus